RNA–Protein interactions for RNA: ENST00000314759.5

SKA3-202, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SKA3, Length 2,919 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-202ENST00000314759 NISCHQ9Y2I1 1504 aa26.96■■□□□ 1.91
SKA3-202ENST00000314759 SHROOM4Q9ULL8 1493 aa23.3■■□□□ 1.32
SKA3-202ENST00000314759 SUPT5HO00267 1087 aaKnown RBP23.01■■□□□ 1.27
SKA3-202ENST00000314759 ZCCHC6Q5VYS8 1495 aaKnown RBP22.86■■□□□ 1.25
SKA3-202ENST00000314759 CCDC180Q9P1Z9 1646 aa22.69■■□□□ 1.22
SKA3-202ENST00000314759 CHIC1Q5VXU3 224 aa22.53■■□□□ 1.2
SKA3-202ENST00000314759 MYO15BQ96JP2 1530 aa22.53■■□□□ 1.2
SKA3-202ENST00000314759 HRCP23327 699 aa22.45■■□□□ 1.18
SKA3-202ENST00000314759 DCAF8L2P0C7V8 631 aa22.34■■□□□ 1.17
SKA3-202ENST00000314759 PCGF6Q9BYE7 350 aa22.18■■□□□ 1.14
SKA3-202ENST00000314759 PPARGC1BQ86YN6 1023 aaKnown RBP22.1■■□□□ 1.13
SKA3-202ENST00000314759 DCAF1Q9Y4B6 1507 aa22.07■■□□□ 1.12
SKA3-202ENST00000314759 LOC105371045A0A1W2PR82 267 aa21.91■■□□□ 1.1
SKA3-202ENST00000314759 TRIM26Q12899 539 aaPredicted RBP21.65■■□□□ 1.06
SKA3-202ENST00000314759 ABCC9O60706 1549 aa21.61■■□□□ 1.05
SKA3-202ENST00000314759 RSF1Q96T23 1441 aaPredicted RBP21.49■■□□□ 1.03
SKA3-202ENST00000314759 SCRIBQ14160 1630 aa21.39■■□□□ 1.02
SKA3-202ENST00000314759 TRIM41Q8WV44 630 aa21.38■■□□□ 1.01
SKA3-202ENST00000314759 RB1CC1Q8TDY2 1594 aa21.3■■□□□ 1
SKA3-202ENST00000314759 ZEB1P37275 1124 aaPredicted RBP21.28■■□□□ 1
SKA3-202ENST00000314759 FAM9AQ8IZU1 332 aaPredicted RBP21.25■□□□□ 0.99
SKA3-202ENST00000314759 PELP1Q8IZL8 1130 aaKnown RBP21.21■□□□□ 0.99
SKA3-202ENST00000314759 SCAF1Q9H7N4 1312 aaKnown RBP21.17■□□□□ 0.98
SKA3-202ENST00000314759 EHMT2Q96KQ7 1210 aa21.08■□□□□ 0.97
SKA3-202ENST00000314759 CECR2Q9BXF3 1484 aa21.05■□□□□ 0.96
SKA3-202ENST00000314759 MROH2BQ7Z745 1585 aa21■□□□□ 0.95
SKA3-202ENST00000314759 NACADO15069 1562 aa20.95■□□□□ 0.94
SKA3-202ENST00000314759 WIZO95785 1651 aa20.89■□□□□ 0.93
SKA3-202ENST00000314759 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.75■□□□□ 0.91
SKA3-202ENST00000314759 BAZ1AQ9NRL2 1556 aaPredicted RBP20.75■□□□□ 0.91
SKA3-202ENST00000314759 EIF4G1Q04637 1599 aaKnown RBP20.73■□□□□ 0.91
SKA3-202ENST00000314759 CCER1Q8TC90 406 aaPredicted RBP20.69■□□□□ 0.9
SKA3-202ENST00000314759 ACIN1Q9UKV3 1341 aaKnown RBP20.67■□□□□ 0.9
SKA3-202ENST00000314759 NEUROD1Q13562 356 aa20.67■□□□□ 0.9
SKA3-202ENST00000314759 CCDC88BA6NC98 1476 aa20.57■□□□□ 0.88
SKA3-202ENST00000314759 ABCC8Q09428 1581 aa20.56■□□□□ 0.88
SKA3-202ENST00000314759 WRNQ14191 1432 aaPredicted RBP eCLIP20.55■□□□□ 0.88
SKA3-202ENST00000314759 TOP2AP11388 1531 aaKnown RBP20.53■□□□□ 0.88
SKA3-202ENST00000314759 GTF3C3Q9Y5Q9 886 aa20.51■□□□□ 0.87
SKA3-202ENST00000314759 CEP162Q5TB80 1403 aa20.5■□□□□ 0.87
SKA3-202ENST00000314759 TTBK1Q5TCY1 1321 aaPredicted RBP20.49■□□□□ 0.87
SKA3-202ENST00000314759 DIEXFQ68CQ4 756 aaKnown RBP20.48■□□□□ 0.87
SKA3-202ENST00000314759 SOGA1O94964 1423 aa20.46■□□□□ 0.87
SKA3-202ENST00000314759 SMARCA2P51531 1590 aa20.45■□□□□ 0.86
SKA3-202ENST00000314759 SMARCA4P51532 1647 aa20.44■□□□□ 0.86
SKA3-202ENST00000314759 TNIKQ9UKE5 1360 aa20.44■□□□□ 0.86
SKA3-202ENST00000314759 CENPBP07199 599 aaPredicted RBP20.37■□□□□ 0.85
SKA3-202ENST00000314759 CSRNP3Q8WYN3 585 aa20.37■□□□□ 0.85
SKA3-202ENST00000314759 RUSC2Q8N2Y8 1516 aa20.35■□□□□ 0.85
SKA3-202ENST00000314759 EEA1Q15075 1411 aa20.34■□□□□ 0.85
SKA3-202ENST00000314759 UBTFP17480 764 aaKnown RBP20.32■□□□□ 0.84
SKA3-202ENST00000314759 UNC13AQ9UPW8 1703 aa20.27■□□□□ 0.83
SKA3-202ENST00000314759 MYT1Q01538 1121 aa20.26■□□□□ 0.83
SKA3-202ENST00000314759 GOLGA3Q08378 1498 aa20.24■□□□□ 0.83
SKA3-202ENST00000314759 ZNF316A6NFI3 1004 aaPredicted RBP20.23■□□□□ 0.83
SKA3-202ENST00000314759 YTHDC1Q96MU7 727 aaKnown RBP20.12■□□□□ 0.81
SKA3-202ENST00000314759 CEP164Q9UPV0 1460 aa20.09■□□□□ 0.81
SKA3-202ENST00000314759 HNRNPUL2Q1KMD3 747 aaKnown RBP20.09■□□□□ 0.81
SKA3-202ENST00000314759 PABPN1Q86U42 306 aaKnown RBP eCLIP20.05■□□□□ 0.8
SKA3-202ENST00000314759 SYNJ1O43426 1573 aa20.05■□□□□ 0.8
SKA3-202ENST00000314759 KIF21BO75037 1637 aa20.05■□□□□ 0.8
SKA3-202ENST00000314759 CLIP1P30622 1438 aa20.04■□□□□ 0.8
SKA3-202ENST00000314759 PEG3Q9GZU2 1588 aa20.02■□□□□ 0.8
SKA3-202ENST00000314759 MIER1Q8N108 512 aa20.01■□□□□ 0.79
SKA3-202ENST00000314759 BICRAQ9NZM4 1560 aa20■□□□□ 0.79
SKA3-202ENST00000314759 VPS8Q8N3P4 1428 aa19.99■□□□□ 0.79
SKA3-202ENST00000314759 RAPGEF2Q9Y4G8 1499 aa19.93■□□□□ 0.78
SKA3-202ENST00000314759 BAZ1BQ9UIG0 1483 aaKnown RBP19.93■□□□□ 0.78
SKA3-202ENST00000314759 APLP2Q06481 763 aa19.91■□□□□ 0.78
SKA3-202ENST00000314759 ATAD2BQ9ULI0 1458 aa19.86■□□□□ 0.77
SKA3-202ENST00000314759 RANGAP1P46060 587 aaPredicted RBP19.86■□□□□ 0.77
SKA3-202ENST00000314759 TOP2BQ02880 1626 aa19.75■□□□□ 0.75
SKA3-202ENST00000314759 CLSPNQ9HAW4 1339 aa19.74■□□□□ 0.75
SKA3-202ENST00000314759 DHX57Q6P158 1386 aaKnown RBP19.73■□□□□ 0.75
SKA3-202ENST00000314759 PRXQ9BXM0 1461 aa19.68■□□□□ 0.74
SKA3-202ENST00000314759 ARAP1Q96P48 1450 aa19.68■□□□□ 0.74
SKA3-202ENST00000314759 KANK4Q5T7N3 995 aaPredicted RBP19.68■□□□□ 0.74
SKA3-202ENST00000314759 ERICH3Q5RHP9 1530 aa19.67■□□□□ 0.74
SKA3-202ENST00000314759 BIVM-ERCC5R4GMW8 1640 aa19.65■□□□□ 0.74
SKA3-202ENST00000314759 RRBP1Q9P2E9 1410 aaKnown RBP19.59■□□□□ 0.73
SKA3-202ENST00000314759 SUPT16HQ9Y5B9 1047 aaKnown RBP19.57■□□□□ 0.72
SKA3-202ENST00000314759 CUX1P39880 1505 aa19.52■□□□□ 0.71
SKA3-202ENST00000314759 CUX2O14529 1486 aa19.51■□□□□ 0.71
SKA3-202ENST00000314759 KIF27Q86VH2 1401 aa19.5■□□□□ 0.71
SKA3-202ENST00000314759 CCNB3Q8WWL7 1395 aa19.49■□□□□ 0.71
SKA3-202ENST00000314759 ARHGAP35Q9NRY4 1499 aa19.46■□□□□ 0.71
SKA3-202ENST00000314759 TSHZ2Q9NRE2 1034 aa19.44■□□□□ 0.7
SKA3-202ENST00000314759 ITGAEP38570 1179 aa19.42■□□□□ 0.7
SKA3-202ENST00000314759 NCAPD3P42695 1498 aa19.41■□□□□ 0.7
SKA3-202ENST00000314759 HMGXB3Q12766 1538 aa19.39■□□□□ 0.69
SKA3-202ENST00000314759 RAB3GAP2Q9H2M9 1393 aa19.37■□□□□ 0.69
SKA3-202ENST00000314759 CFTRP13569 1480 aa19.36■□□□□ 0.69
SKA3-202ENST00000314759 MAPKBP1O60336 1514 aa19.34■□□□□ 0.69
SKA3-202ENST00000314759 ANP32EQ9BTT0 268 aa19.34■□□□□ 0.69
SKA3-202ENST00000314759 KCNH8Q96L42 1107 aa19.33■□□□□ 0.68
SKA3-202ENST00000314759 IGF1RP08069 1367 aa19.3■□□□□ 0.68
SKA3-202ENST00000314759 TIAM1Q13009 1591 aa19.28■□□□□ 0.68
SKA3-202ENST00000314759 MAP3K1Q13233 1512 aa19.27■□□□□ 0.68
SKA3-202ENST00000314759 SETD5Q9C0A6 1442 aa19.26■□□□□ 0.67
SKA3-202ENST00000314759 LRRC9Q6ZRR7 1453 aa19.23■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms