RNA–Protein interactions for RNA: ENST00000563235.5

SMG1-207, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 2

Gene SMG1, Length 2,910 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-207ENST00000563235 AEBP2Q6ZN18 517 aaPredicted RBP12.18□□□□□ -0.46
SMG1-207ENST00000563235 CHIC1Q5VXU3 224 aa11.54□□□□□ -0.56
SMG1-207ENST00000563235 SENP3Q9H4L4 574 aaPredicted RBP10.52□□□□□ -0.72
SMG1-207ENST00000563235 PHF23Q9BUL5 403 aaPredicted RBP10.3□□□□□ -0.76
SMG1-207ENST00000563235 SLC24A1O60721 1099 aa10.23□□□□□ -0.77
SMG1-207ENST00000563235 FOXD1Q16676 465 aa9.74□□□□□ -0.85
SMG1-207ENST00000563235 EHMT2Q96KQ7 1210 aa9.57□□□□□ -0.88
SMG1-207ENST00000563235 PLPPR3Q6T4P5 718 aa9.38□□□□□ -0.91
SMG1-207ENST00000563235 MSH5O43196 834 aa9.27□□□□□ -0.93
SMG1-207ENST00000563235 RTN4Q9NQC3 1192 aaKnown RBP9.27□□□□□ -0.93
SMG1-207ENST00000563235 DAXXQ9UER7 740 aaPredicted RBP9.21□□□□□ -0.93
SMG1-207ENST00000563235 POTEDQ86YR6 584 aa9.16□□□□□ -0.94
SMG1-207ENST00000563235 NCBP3Q53F19 620 aaKnown RBP9.09□□□□□ -0.95
SMG1-207ENST00000563235 PIAS4Q8N2W9 510 aaPredicted RBP9.06□□□□□ -0.96
SMG1-207ENST00000563235 KCNA4P22459 653 aa8.95□□□□□ -0.98
SMG1-207ENST00000563235 PPP6R1Q9UPN7 881 aa8.95□□□□□ -0.98
SMG1-207ENST00000563235 AMER1Q5JTC6 1135 aaPredicted RBP8.94□□□□□ -0.98
SMG1-207ENST00000563235 PRKCSHP14314 528 aaPredicted RBP8.92□□□□□ -0.98
SMG1-207ENST00000563235 ADRA2BP18089 450 aa8.92□□□□□ -0.98
SMG1-207ENST00000563235 CSRNP3Q8WYN3 585 aa8.9□□□□□ -0.98
SMG1-207ENST00000563235 APLP2Q06481 763 aa8.76□□□□□ -1.01
SMG1-207ENST00000563235 TIMELESSQ9UNS1 1208 aa8.72□□□□□ -1.01
SMG1-207ENST00000563235 ARXQ96QS3 562 aa8.68□□□□□ -1.02
SMG1-207ENST00000563235 TTBK1Q5TCY1 1321 aaPredicted RBP8.66□□□□□ -1.02
SMG1-207ENST00000563235 PELP1Q8IZL8 1130 aaKnown RBP8.61□□□□□ -1.03
SMG1-207ENST00000563235 MYT1Q01538 1121 aa8.58□□□□□ -1.04
SMG1-207ENST00000563235 TULP1O00294 542 aaPredicted RBP8.56□□□□□ -1.04
SMG1-207ENST00000563235 ERICH6Q7L0X2 663 aa8.56□□□□□ -1.04
SMG1-207ENST00000563235 TAOK2Q9UL54 1235 aa8.56□□□□□ -1.04
SMG1-207ENST00000563235 TPRNQ4KMQ1 711 aa8.42□□□□□ -1.06
SMG1-207ENST00000563235 HOMEZQ8IX15 550 aa8.4□□□□□ -1.06
SMG1-207ENST00000563235 RANGAP1P46060 587 aaPredicted RBP8.4□□□□□ -1.07
SMG1-207ENST00000563235 KLHL34Q8N239 644 aa8.4□□□□□ -1.07
SMG1-207ENST00000563235 BCANQ96GW7 911 aa8.38□□□□□ -1.07
SMG1-207ENST00000563235 SLC4A1APQ9BWU0 796 aaKnown RBP8.37□□□□□ -1.07
SMG1-207ENST00000563235 DMRT2Q9Y5R5 561 aa8.33□□□□□ -1.08
SMG1-207ENST00000563235 SCAF1Q9H7N4 1312 aaKnown RBP8.32□□□□□ -1.08
SMG1-207ENST00000563235 PODXL2Q9NZ53 605 aa8.3□□□□□ -1.08
SMG1-207ENST00000563235 PLCB2Q00722 1185 aa8.28□□□□□ -1.08
SMG1-207ENST00000563235 GTF3C3Q9Y5Q9 886 aa8.25□□□□□ -1.09
SMG1-207ENST00000563235 EIF5BO60841 1220 aaKnown RBP8.22□□□□□ -1.09
SMG1-207ENST00000563235 MAPK8IP2Q13387 824 aaPredicted RBP8.2□□□□□ -1.1
SMG1-207ENST00000563235 HAP1P54257 671 aaPredicted RBP8.19□□□□□ -1.1
SMG1-207ENST00000563235 ZBTB22O15209 634 aa8.17□□□□□ -1.1
SMG1-207ENST00000563235 NPM2Q86SE8 214 aaKnown RBP8.09□□□□□ -1.11
SMG1-207ENST00000563235 TMEM132AQ24JP5 1023 aa8.07□□□□□ -1.12
SMG1-207ENST00000563235 PLEKHG5O94827 1062 aa8.04□□□□□ -1.12
SMG1-207ENST00000563235 C14orf37Q86TY3 774 aa8.01□□□□□ -1.13
SMG1-207ENST00000563235 PPP4R3CPQ6ZMV5 832 aa7.99□□□□□ -1.13
SMG1-207ENST00000563235 HOXD11P31277 338 aaPredicted RBP7.99□□□□□ -1.13
SMG1-207ENST00000563235 KDM2AQ9Y2K7 1162 aa7.98□□□□□ -1.13
SMG1-207ENST00000563235 TRIM26Q12899 539 aaPredicted RBP7.98□□□□□ -1.13
SMG1-207ENST00000563235 VSIG10Q8N0Z9 540 aa7.96□□□□□ -1.14
SMG1-207ENST00000563235 CACNB1Q02641 598 aaPredicted RBP7.93□□□□□ -1.14
SMG1-207ENST00000563235 FKBP8Q14318 412 aa7.93□□□□□ -1.14
SMG1-207ENST00000563235 SUPT5HO00267 1087 aaKnown RBP7.92□□□□□ -1.14
SMG1-207ENST00000563235 CNKSR2Q8WXI2 1034 aa7.92□□□□□ -1.14
SMG1-207ENST00000563235 FBLN2P98095 1184 aa7.92□□□□□ -1.14
SMG1-207ENST00000563235 LOC105371045A0A1W2PR82 267 aa7.9□□□□□ -1.14
SMG1-207ENST00000563235 RNF216Q9NWF9 866 aaPredicted RBP7.89□□□□□ -1.15
SMG1-207ENST00000563235 FBXO3Q9UK99 471 aa7.89□□□□□ -1.15
SMG1-207ENST00000563235 HRCP23327 699 aa7.89□□□□□ -1.15
SMG1-207ENST00000563235 UBTFP17480 764 aaKnown RBP7.89□□□□□ -1.15
SMG1-207ENST00000563235 DNAJC5BQ9UF47 199 aa7.87□□□□□ -1.15
SMG1-207ENST00000563235 RNF39Q9H2S5 420 aa7.85□□□□□ -1.15
SMG1-207ENST00000563235 DCAF8L1A6NGE4 600 aa7.83□□□□□ -1.16
SMG1-207ENST00000563235 NPM3O75607 178 aaKnown RBP7.83□□□□□ -1.16
SMG1-207ENST00000563235 C1QBPQ07021 282 aaKnown RBP7.77□□□□□ -1.17
SMG1-207ENST00000563235 DCAF8L2P0C7V8 631 aa7.71□□□□□ -1.18
SMG1-207ENST00000563235 CHMP4AQ9BY43 222 aa7.65□□□□□ -1.18
SMG1-207ENST00000563235 PDIA4P13667 645 aaKnown RBP7.63□□□□□ -1.19
SMG1-207ENST00000563235 IGSF3O75054 1194 aa7.62□□□□□ -1.19
SMG1-207ENST00000563235 SAMD1Q6SPF0 538 aaPredicted RBP7.6□□□□□ -1.19
SMG1-207ENST00000563235 BCL11AQ9H165 835 aa7.6□□□□□ -1.19
SMG1-207ENST00000563235 PAXIP1Q6ZW49 1069 aaPredicted RBP7.55□□□□□ -1.2
SMG1-207ENST00000563235 DHX37Q8IY37 1157 aaKnown RBP7.54□□□□□ -1.2
SMG1-207ENST00000563235 TSHZ2Q9NRE2 1034 aa7.54□□□□□ -1.2
SMG1-207ENST00000563235 FOXD4L1Q9NU39 408 aa7.54□□□□□ -1.2
SMG1-207ENST00000563235 NBR1Q14596 966 aa7.53□□□□□ -1.2
SMG1-207ENST00000563235 CDK11BP21127 795 aaKnown RBP7.53□□□□□ -1.2
SMG1-207ENST00000563235 UBE2Q2Q8WVN8 375 aa7.53□□□□□ -1.2
SMG1-207ENST00000563235 GRWD1Q9BQ67 446 aaKnown RBP eCLIP7.53□□□□□ -1.23e-6■□□□□ 9.6
SMG1-207ENST00000563235 CDK11AQ9UQ88 783 aaPredicted RBP7.53□□□□□ -1.2
SMG1-207ENST00000563235 CFAP44Q96MT7 982 aa7.52□□□□□ -1.21
SMG1-207ENST00000563235 TRHP20396 242 aaPredicted RBP7.51□□□□□ -1.21
SMG1-207ENST00000563235 SHROOM4Q9ULL8 1493 aa7.48□□□□□ -1.21
SMG1-207ENST00000563235 NPM1P06748 294 aaKnown RBP eCLIP7.47□□□□□ -1.21
SMG1-207ENST00000563235 CCDC9Q9Y3X0 531 aaKnown RBP7.46□□□□□ -1.21
SMG1-207ENST00000563235 ARID3AQ99856 593 aa7.44□□□□□ -1.22
SMG1-207ENST00000563235 NECTIN2Q92692 538 aa7.44□□□□□ -1.22
SMG1-207ENST00000563235 DNAJC5Q9H3Z4 198 aa7.43□□□□□ -1.22
SMG1-207ENST00000563235 PKD2Q13563 968 aa7.43□□□□□ -1.22
SMG1-207ENST00000563235 FAM9AQ8IZU1 332 aaPredicted RBP7.43□□□□□ -1.22
SMG1-207ENST00000563235 PDE4CQ08493 712 aa7.42□□□□□ -1.22
SMG1-207ENST00000563235 BRD2P25440 801 aaKnown RBP7.42□□□□□ -1.22
SMG1-207ENST00000563235 ZBTB4Q9P1Z0 1013 aaPredicted RBP7.41□□□□□ -1.22
SMG1-207ENST00000563235 HSP90B1P14625 803 aaKnown RBP7.41□□□□□ -1.22
SMG1-207ENST00000563235 BBXQ8WY36 941 aaPredicted RBP7.4□□□□□ -1.23
SMG1-207ENST00000563235 NISCHQ9Y2I1 1504 aa7.38□□□□□ -1.23
SMG1-207ENST00000563235 ABCC9O60706 1549 aa7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms