RNA–Protein interactions for RNA: ENST00000295701.9

CNOT9-202, Transcript of CCR4-NOT transcription complex subunit 9, humanhuman

TSL 1 (best) BASIC

Gene CNOT9, Length 1,126 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT9-202ENST00000295701 AEBP2Q6ZN18 517 aaPredicted RBP27.86■■■□□ 2.05
CNOT9-202ENST00000295701 CHIC1Q5VXU3 224 aa26.68■■□□□ 1.86
CNOT9-202ENST00000295701 SENP3Q9H4L4 574 aaPredicted RBP23.76■■□□□ 1.39
CNOT9-202ENST00000295701 PHF23Q9BUL5 403 aaPredicted RBP23.48■■□□□ 1.35
CNOT9-202ENST00000295701 NISCHQ9Y2I1 1504 aa23.42■■□□□ 1.34
CNOT9-202ENST00000295701 FOXD1Q16676 465 aa22.1■■□□□ 1.13
CNOT9-202ENST00000295701 PLPPR3Q6T4P5 718 aa21.43■■□□□ 1.02
CNOT9-202ENST00000295701 ABCC9O60706 1549 aa21.2■□□□□ 0.98
CNOT9-202ENST00000295701 CCDC180Q9P1Z9 1646 aa21■□□□□ 0.95
CNOT9-202ENST00000295701 PPP6R1Q9UPN7 881 aa20.83■□□□□ 0.93
CNOT9-202ENST00000295701 ADRA2BP18089 450 aa20.79■□□□□ 0.92
CNOT9-202ENST00000295701 PIAS4Q8N2W9 510 aaPredicted RBP20.72■□□□□ 0.91
CNOT9-202ENST00000295701 MSH5O43196 834 aa20.61■□□□□ 0.89
CNOT9-202ENST00000295701 POTEDQ86YR6 584 aa20.29■□□□□ 0.84
CNOT9-202ENST00000295701 DNAJC5BQ9UF47 199 aa20.07■□□□□ 0.8
CNOT9-202ENST00000295701 RB1CC1Q8TDY2 1594 aa20.04■□□□□ 0.8
CNOT9-202ENST00000295701 DCAF8L2P0C7V8 631 aa19.92■□□□□ 0.78
CNOT9-202ENST00000295701 NACADO15069 1562 aa19.88■□□□□ 0.77
CNOT9-202ENST00000295701 PABPN1Q86U42 306 aaKnown RBP eCLIP19.78■□□□□ 0.76
CNOT9-202ENST00000295701 UNC13AQ9UPW8 1703 aa19.71■□□□□ 0.75
CNOT9-202ENST00000295701 BICRAQ9NZM4 1560 aa19.54■□□□□ 0.72
CNOT9-202ENST00000295701 MYO15BQ96JP2 1530 aa19.53■□□□□ 0.72
CNOT9-202ENST00000295701 ZCCHC6Q5VYS8 1495 aaKnown RBP19.37■□□□□ 0.69
CNOT9-202ENST00000295701 DCAF1Q9Y4B6 1507 aa19.26■□□□□ 0.67
CNOT9-202ENST00000295701 SCRIBQ14160 1630 aa19.22■□□□□ 0.67
CNOT9-202ENST00000295701 CC2D2AQ9P2K1 1620 aa19.12■□□□□ 0.65
CNOT9-202ENST00000295701 SHROOM4Q9ULL8 1493 aa19.1■□□□□ 0.65
CNOT9-202ENST00000295701 CECR2Q9BXF3 1484 aa19.07■□□□□ 0.64
CNOT9-202ENST00000295701 SCAF1Q9H7N4 1312 aaKnown RBP19.04■□□□□ 0.64
CNOT9-202ENST00000295701 EIF4G1Q04637 1599 aaKnown RBP19.03■□□□□ 0.64
CNOT9-202ENST00000295701 MAPK8IP2Q13387 824 aaPredicted RBP19.02■□□□□ 0.64
CNOT9-202ENST00000295701 DMRT2Q9Y5R5 561 aa18.86■□□□□ 0.61
CNOT9-202ENST00000295701 PPP4R3CPQ6ZMV5 832 aa18.81■□□□□ 0.6
CNOT9-202ENST00000295701 CNKSR2Q8WXI2 1034 aa18.41■□□□□ 0.54
CNOT9-202ENST00000295701 DNAJC5Q9H3Z4 198 aa18.41■□□□□ 0.54
CNOT9-202ENST00000295701 NCAPD3P42695 1498 aa18.38■□□□□ 0.53
CNOT9-202ENST00000295701 ATAD2BQ9ULI0 1458 aa18.33■□□□□ 0.53
CNOT9-202ENST00000295701 SMARCA4P51532 1647 aa18.29■□□□□ 0.52
CNOT9-202ENST00000295701 ERCC6Q03468 1493 aa18.26■□□□□ 0.51
CNOT9-202ENST00000295701 HOXD11P31277 338 aaPredicted RBP18.25■□□□□ 0.51
CNOT9-202ENST00000295701 SMARCA2P51531 1590 aa18.23■□□□□ 0.51
CNOT9-202ENST00000295701 CUX2O14529 1486 aa18.21■□□□□ 0.51
CNOT9-202ENST00000295701 NESP48681 1621 aa18.21■□□□□ 0.51
CNOT9-202ENST00000295701 HMGXB3Q12766 1538 aa18.2■□□□□ 0.5
CNOT9-202ENST00000295701 RNF216Q9NWF9 866 aaPredicted RBP18.18■□□□□ 0.5
CNOT9-202ENST00000295701 NCBP3Q53F19 620 aaKnown RBP18.17■□□□□ 0.5
CNOT9-202ENST00000295701 BAZ1AQ9NRL2 1556 aaPredicted RBP18.14■□□□□ 0.49
CNOT9-202ENST00000295701 BAZ1BQ9UIG0 1483 aaKnown RBP18.14■□□□□ 0.49
CNOT9-202ENST00000295701 DCAF8L1A6NGE4 600 aa18.11■□□□□ 0.49
CNOT9-202ENST00000295701 MROH2BQ7Z745 1585 aa18.09■□□□□ 0.49
CNOT9-202ENST00000295701 PEG3Q9GZU2 1588 aa18.06■□□□□ 0.48
CNOT9-202ENST00000295701 THOC2Q8NI27 1593 aaKnown RBP17.98■□□□□ 0.47
CNOT9-202ENST00000295701 LAMC3Q9Y6N6 1575 aa17.96■□□□□ 0.47
CNOT9-202ENST00000295701 KIF21AQ7Z4S6 1674 aa17.96■□□□□ 0.47
CNOT9-202ENST00000295701 WIZO95785 1651 aa17.88■□□□□ 0.45
CNOT9-202ENST00000295701 NPM3O75607 178 aaKnown RBP17.88■□□□□ 0.45
CNOT9-202ENST00000295701 PDS5BQ9NTI5 1447 aa17.87■□□□□ 0.45
CNOT9-202ENST00000295701 CADPSQ9ULU8 1353 aa17.83■□□□□ 0.45
CNOT9-202ENST00000295701 KCNA4P22459 653 aa17.73■□□□□ 0.43
CNOT9-202ENST00000295701 MRC2Q9UBG0 1479 aa17.73■□□□□ 0.43
CNOT9-202ENST00000295701 WDR62O43379 1518 aa17.68■□□□□ 0.42
CNOT9-202ENST00000295701 RSF1Q96T23 1441 aaPredicted RBP17.66■□□□□ 0.42
CNOT9-202ENST00000295701 CEP164Q9UPV0 1460 aa17.64■□□□□ 0.41
CNOT9-202ENST00000295701 FANCD2Q9BXW9 1451 aa17.63■□□□□ 0.41
CNOT9-202ENST00000295701 TRIM41Q8WV44 630 aa17.61■□□□□ 0.41
CNOT9-202ENST00000295701 RNF39Q9H2S5 420 aa17.61■□□□□ 0.41
CNOT9-202ENST00000295701 CFTRP13569 1480 aa17.6■□□□□ 0.41
CNOT9-202ENST00000295701 TOP2AP11388 1531 aaKnown RBP17.57■□□□□ 0.4
CNOT9-202ENST00000295701 CACNB1Q02641 598 aaPredicted RBP17.57■□□□□ 0.4
CNOT9-202ENST00000295701 URB2Q14146 1524 aaKnown RBP17.53■□□□□ 0.4
CNOT9-202ENST00000295701 OSCARQ8IYS5 282 aa17.44■□□□□ 0.38
CNOT9-202ENST00000295701 CCDC88BA6NC98 1476 aa17.43■□□□□ 0.38
CNOT9-202ENST00000295701 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.42■□□□□ 0.38
CNOT9-202ENST00000295701 PRDM2Q13029 1718 aa17.41■□□□□ 0.38
CNOT9-202ENST00000295701 C1QBPQ07021 282 aaKnown RBP17.37■□□□□ 0.37
CNOT9-202ENST00000295701 ZNF608Q9ULD9 1512 aaPredicted RBP17.35■□□□□ 0.37
CNOT9-202ENST00000295701 TOPBP1Q92547 1522 aa17.3■□□□□ 0.36
CNOT9-202ENST00000295701 IFT140Q96RY7 1462 aa17.29■□□□□ 0.36
CNOT9-202ENST00000295701 RIMBP3CA6NJZ7 1639 aa17.24■□□□□ 0.35
CNOT9-202ENST00000295701 RIMBP3BA6NNM3 1639 aa17.24■□□□□ 0.35
CNOT9-202ENST00000295701 RIMBP3Q9UFD9 1639 aa17.24■□□□□ 0.35
CNOT9-202ENST00000295701 EIF4G3O43432 1585 aaKnown RBP17.19■□□□□ 0.34
CNOT9-202ENST00000295701 DNMBPQ6XZF7 1577 aa17.19■□□□□ 0.34
CNOT9-202ENST00000295701 ABCC8Q09428 1581 aa17.18■□□□□ 0.34
CNOT9-202ENST00000295701 AQRO60306 1485 aaKnown RBP eCLIP17.18■□□□□ 0.342e-7■■■■■ 42.6
CNOT9-202ENST00000295701 TARBP1Q13395 1621 aaKnown RBP17.15■□□□□ 0.34
CNOT9-202ENST00000295701 ARHGEF11O15085 1522 aa17.14■□□□□ 0.33
CNOT9-202ENST00000295701 CHD1O14646 1710 aa17.13■□□□□ 0.33
CNOT9-202ENST00000295701 POLA1P09884 1462 aaPredicted RBP17.12■□□□□ 0.33
CNOT9-202ENST00000295701 RAD54L2Q9Y4B4 1467 aa17.11■□□□□ 0.33
CNOT9-202ENST00000295701 FBLN2P98095 1184 aa17.1■□□□□ 0.33
CNOT9-202ENST00000295701 CYB5RLQ6IPT4 315 aa17.09■□□□□ 0.33
CNOT9-202ENST00000295701 TDRD9Q8NDG6 1382 aaKnown RBP17.06■□□□□ 0.32
CNOT9-202ENST00000295701 U3KPZ7 1027 aaPredicted RBP17.05■□□□□ 0.32
CNOT9-202ENST00000295701 SOGA1O94964 1423 aa17.04■□□□□ 0.32
CNOT9-202ENST00000295701 SLC4A2P04920 1241 aa17.02■□□□□ 0.32
CNOT9-202ENST00000295701 FGD5Q6ZNL6 1462 aa17■□□□□ 0.31
CNOT9-202ENST00000295701 ARAP1Q96P48 1450 aa16.99■□□□□ 0.31
CNOT9-202ENST00000295701 CUX1P39880 1505 aa16.99■□□□□ 0.31
CNOT9-202ENST00000295701 SNAPC4Q5SXM2 1469 aa16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms