Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC19.88■□□□□ 0.77
PDLIM1O00151 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
PDLIM1O00151 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC19.88■□□□□ 0.77
PDLIM1O00151 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC19.88■□□□□ 0.77
PDLIM1O00151 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
PDLIM1O00151 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
PDLIM1O00151 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC19.88■□□□□ 0.77
PDLIM1O00151 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
PDLIM1O00151 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
PDLIM1O00151 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
PDLIM1O00151 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
PDLIM1O00151 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC19.87■□□□□ 0.77
PDLIM1O00151 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
PDLIM1O00151 GATM-206ENST00000558336 1522 ntTSL 2 BASIC19.87■□□□□ 0.77
PDLIM1O00151 C17orf82-201ENST00000623772 1530 ntBASIC19.87■□□□□ 0.77
PDLIM1O00151 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
PDLIM1O00151 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC19.87■□□□□ 0.77
PDLIM1O00151 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
PDLIM1O00151 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC19.87■□□□□ 0.77
PDLIM1O00151 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
PDLIM1O00151 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC19.87■□□□□ 0.77
PDLIM1O00151 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC19.87■□□□□ 0.77
PDLIM1O00151 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
PDLIM1O00151 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
PDLIM1O00151 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
PDLIM1O00151 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
PDLIM1O00151 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC19.86■□□□□ 0.77
PDLIM1O00151 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
PDLIM1O00151 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
PDLIM1O00151 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
PDLIM1O00151 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC19.86■□□□□ 0.77
PDLIM1O00151 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
PDLIM1O00151 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
PDLIM1O00151 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
PDLIM1O00151 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
PDLIM1O00151 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
PDLIM1O00151 AC104564.3-201ENST00000582367 638 ntBASIC19.86■□□□□ 0.77
PDLIM1O00151 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
PDLIM1O00151 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC19.86■□□□□ 0.77
PDLIM1O00151 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
PDLIM1O00151 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
PDLIM1O00151 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC19.86■□□□□ 0.77
PDLIM1O00151 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
PDLIM1O00151 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
PDLIM1O00151 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC19.86■□□□□ 0.77
PDLIM1O00151 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
PDLIM1O00151 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC19.86■□□□□ 0.77
PDLIM1O00151 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
PDLIM1O00151 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
PDLIM1O00151 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC19.85■□□□□ 0.77
PDLIM1O00151 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC19.85■□□□□ 0.77
PDLIM1O00151 BX323043.1-201ENST00000641006 1765 ntBASIC19.85■□□□□ 0.77
PDLIM1O00151 AFG3L1P-217ENST00000557444 2447 ntBASIC19.85■□□□□ 0.77
PDLIM1O00151 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC19.85■□□□□ 0.77
PDLIM1O00151 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC19.85■□□□□ 0.77
PDLIM1O00151 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
PDLIM1O00151 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC19.85■□□□□ 0.77
PDLIM1O00151 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC19.85■□□□□ 0.77
PDLIM1O00151 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC19.85■□□□□ 0.77
PDLIM1O00151 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
PDLIM1O00151 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
PDLIM1O00151 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
PDLIM1O00151 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC19.84■□□□□ 0.77
PDLIM1O00151 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
PDLIM1O00151 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
PDLIM1O00151 SRD5A1P1-201ENST00000442297 786 ntBASIC19.84■□□□□ 0.77
PDLIM1O00151 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
PDLIM1O00151 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
PDLIM1O00151 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
PDLIM1O00151 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC19.84■□□□□ 0.77
PDLIM1O00151 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
PDLIM1O00151 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
PDLIM1O00151 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
PDLIM1O00151 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC19.84■□□□□ 0.77
PDLIM1O00151 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
PDLIM1O00151 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
PDLIM1O00151 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
PDLIM1O00151 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC19.83■□□□□ 0.77
PDLIM1O00151 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
PDLIM1O00151 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
PDLIM1O00151 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
PDLIM1O00151 OXCT2P1-201ENST00000447263 1535 ntBASIC19.83■□□□□ 0.77
PDLIM1O00151 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
PDLIM1O00151 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
PDLIM1O00151 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC19.83■□□□□ 0.77
PDLIM1O00151 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
PDLIM1O00151 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
PDLIM1O00151 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
PDLIM1O00151 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
PDLIM1O00151 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC19.83■□□□□ 0.77
PDLIM1O00151 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
PDLIM1O00151 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC19.83■□□□□ 0.77
PDLIM1O00151 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC19.83■□□□□ 0.77
PDLIM1O00151 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
PDLIM1O00151 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC19.83■□□□□ 0.76
PDLIM1O00151 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC19.83■□□□□ 0.76
PDLIM1O00151 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
PDLIM1O00151 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
PDLIM1O00151 AL049796.1-201ENST00000565336 1766 ntBASIC19.83■□□□□ 0.76
PDLIM1O00151 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms