Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC30.79■■■□□ 2.52
PCDHA1Q9Y5I3 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC30.79■■■□□ 2.52
PCDHA1Q9Y5I3 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC30.79■■■□□ 2.52
PCDHA1Q9Y5I3 AC044849.2-201ENST00000606596 710 ntBASIC30.79■■■□□ 2.52
PCDHA1Q9Y5I3 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC30.78■■■□□ 2.52
PCDHA1Q9Y5I3 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC30.78■■■□□ 2.52
PCDHA1Q9Y5I3 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
PCDHA1Q9Y5I3 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
PCDHA1Q9Y5I3 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC30.76■■■□□ 2.51
PCDHA1Q9Y5I3 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC30.75■■■□□ 2.51
PCDHA1Q9Y5I3 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
PCDHA1Q9Y5I3 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC30.74■■■□□ 2.51
PCDHA1Q9Y5I3 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC30.73■■■□□ 2.51
PCDHA1Q9Y5I3 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC30.73■■■□□ 2.51
PCDHA1Q9Y5I3 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC30.73■■■□□ 2.51
PCDHA1Q9Y5I3 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC30.73■■■□□ 2.51
PCDHA1Q9Y5I3 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC30.73■■■□□ 2.51
PCDHA1Q9Y5I3 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
PCDHA1Q9Y5I3 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC30.7■■■□□ 2.51
PCDHA1Q9Y5I3 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC30.7■■■□□ 2.51
PCDHA1Q9Y5I3 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.51
PCDHA1Q9Y5I3 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC30.7■■■□□ 2.51
PCDHA1Q9Y5I3 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC30.69■■■□□ 2.5
PCDHA1Q9Y5I3 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC30.68■■■□□ 2.5
PCDHA1Q9Y5I3 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
PCDHA1Q9Y5I3 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
PCDHA1Q9Y5I3 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC30.68■■■□□ 2.5
PCDHA1Q9Y5I3 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC30.68■■■□□ 2.5
PCDHA1Q9Y5I3 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC30.68■■■□□ 2.5
PCDHA1Q9Y5I3 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC30.67■■■□□ 2.5
PCDHA1Q9Y5I3 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC30.67■■■□□ 2.5
PCDHA1Q9Y5I3 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
PCDHA1Q9Y5I3 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC30.66■■■□□ 2.5
PCDHA1Q9Y5I3 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
PCDHA1Q9Y5I3 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC30.65■■■□□ 2.5
PCDHA1Q9Y5I3 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC30.65■■■□□ 2.5
PCDHA1Q9Y5I3 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC30.65■■■□□ 2.5
PCDHA1Q9Y5I3 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC30.65■■■□□ 2.5
PCDHA1Q9Y5I3 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
PCDHA1Q9Y5I3 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC30.64■■■□□ 2.5
PCDHA1Q9Y5I3 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
PCDHA1Q9Y5I3 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC30.63■■■□□ 2.49
PCDHA1Q9Y5I3 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC30.62■■■□□ 2.49
PCDHA1Q9Y5I3 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
PCDHA1Q9Y5I3 BOD1-206ENST00000480951 814 ntTSL 2 BASIC30.61■■■□□ 2.49
PCDHA1Q9Y5I3 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
PCDHA1Q9Y5I3 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC30.61■■■□□ 2.49
PCDHA1Q9Y5I3 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
PCDHA1Q9Y5I3 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
PCDHA1Q9Y5I3 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
PCDHA1Q9Y5I3 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC30.59■■■□□ 2.49
PCDHA1Q9Y5I3 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC30.58■■■□□ 2.49
PCDHA1Q9Y5I3 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC30.58■■■□□ 2.49
PCDHA1Q9Y5I3 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC30.57■■■□□ 2.48
PCDHA1Q9Y5I3 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC30.57■■■□□ 2.48
PCDHA1Q9Y5I3 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
PCDHA1Q9Y5I3 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC30.56■■■□□ 2.48
PCDHA1Q9Y5I3 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC30.56■■■□□ 2.48
PCDHA1Q9Y5I3 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
PCDHA1Q9Y5I3 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC30.55■■■□□ 2.48
PCDHA1Q9Y5I3 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
PCDHA1Q9Y5I3 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC30.55■■■□□ 2.48
PCDHA1Q9Y5I3 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC30.54■■■□□ 2.48
PCDHA1Q9Y5I3 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC30.54■■■□□ 2.48
PCDHA1Q9Y5I3 AC108673.1-201ENST00000510422 1159 ntBASIC30.53■■■□□ 2.48
PCDHA1Q9Y5I3 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC30.53■■■□□ 2.48
PCDHA1Q9Y5I3 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
PCDHA1Q9Y5I3 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
PCDHA1Q9Y5I3 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC30.52■■■□□ 2.48
PCDHA1Q9Y5I3 MIR6090-201ENST00000622481 60 ntBASIC30.52■■■□□ 2.48
PCDHA1Q9Y5I3 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
PCDHA1Q9Y5I3 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.48
PCDHA1Q9Y5I3 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
PCDHA1Q9Y5I3 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC30.51■■■□□ 2.47
PCDHA1Q9Y5I3 MLEC-202ENST00000412616 841 ntTSL 3 BASIC30.49■■■□□ 2.47
PCDHA1Q9Y5I3 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
PCDHA1Q9Y5I3 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC30.48■■■□□ 2.47
PCDHA1Q9Y5I3 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC30.48■■■□□ 2.47
PCDHA1Q9Y5I3 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
PCDHA1Q9Y5I3 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC30.47■■■□□ 2.47
PCDHA1Q9Y5I3 ABHD17AP4-201ENST00000411545 909 ntBASIC30.47■■■□□ 2.47
PCDHA1Q9Y5I3 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
PCDHA1Q9Y5I3 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC30.46■■■□□ 2.47
PCDHA1Q9Y5I3 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC30.46■■■□□ 2.47
PCDHA1Q9Y5I3 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC30.46■■■□□ 2.47
PCDHA1Q9Y5I3 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
PCDHA1Q9Y5I3 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.47
PCDHA1Q9Y5I3 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.47
PCDHA1Q9Y5I3 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC30.44■■■□□ 2.46
PCDHA1Q9Y5I3 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC30.44■■■□□ 2.46
PCDHA1Q9Y5I3 CIB2-204ENST00000557846 934 ntTSL 3 BASIC30.44■■■□□ 2.46
PCDHA1Q9Y5I3 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC30.44■■■□□ 2.46
PCDHA1Q9Y5I3 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC30.43■■■□□ 2.46
PCDHA1Q9Y5I3 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC30.43■■■□□ 2.46
PCDHA1Q9Y5I3 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC30.43■■■□□ 2.46
PCDHA1Q9Y5I3 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC30.43■■■□□ 2.46
PCDHA1Q9Y5I3 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC30.42■■■□□ 2.46
PCDHA1Q9Y5I3 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
PCDHA1Q9Y5I3 DUX4L29-201ENST00000425409 679 ntBASIC30.4■■■□□ 2.46
PCDHA1Q9Y5I3 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
Retrieved 100 of 98,524 protein–RNA pairs in 9.7 ms