Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC25.14■■□□□ 1.62
PTCHD1Q96NR3 RPS2P35-201ENST00000443417 897 ntBASIC25.14■■□□□ 1.62
PTCHD1Q96NR3 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
PTCHD1Q96NR3 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC25.12■■□□□ 1.61
PTCHD1Q96NR3 DUX4L28-201ENST00000623687 678 ntBASIC25.12■■□□□ 1.61
PTCHD1Q96NR3 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
PTCHD1Q96NR3 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC25.12■■□□□ 1.61
PTCHD1Q96NR3 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC25.12■■□□□ 1.61
PTCHD1Q96NR3 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
PTCHD1Q96NR3 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
PTCHD1Q96NR3 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
PTCHD1Q96NR3 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC25.1■■□□□ 1.61
PTCHD1Q96NR3 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
PTCHD1Q96NR3 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
PTCHD1Q96NR3 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
PTCHD1Q96NR3 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
PTCHD1Q96NR3 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
PTCHD1Q96NR3 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC25.08■■□□□ 1.61
PTCHD1Q96NR3 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC25.08■■□□□ 1.61
PTCHD1Q96NR3 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC25.07■■□□□ 1.6
PTCHD1Q96NR3 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
PTCHD1Q96NR3 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC25.07■■□□□ 1.6
PTCHD1Q96NR3 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC25.07■■□□□ 1.6
PTCHD1Q96NR3 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
PTCHD1Q96NR3 RPS2-209ENST00000529806 993 ntTSL 3 BASIC25.05■■□□□ 1.6
PTCHD1Q96NR3 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC25.05■■□□□ 1.6
PTCHD1Q96NR3 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC25.04■■□□□ 1.6
PTCHD1Q96NR3 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC25.04■■□□□ 1.6
PTCHD1Q96NR3 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
PTCHD1Q96NR3 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
PTCHD1Q96NR3 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
PTCHD1Q96NR3 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC25.02■■□□□ 1.6
PTCHD1Q96NR3 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC25.02■■□□□ 1.6
PTCHD1Q96NR3 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
PTCHD1Q96NR3 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
PTCHD1Q96NR3 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC25.01■■□□□ 1.59
PTCHD1Q96NR3 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC25.01■■□□□ 1.59
PTCHD1Q96NR3 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
PTCHD1Q96NR3 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
PTCHD1Q96NR3 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC25■■□□□ 1.59
PTCHD1Q96NR3 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC25■■□□□ 1.59
PTCHD1Q96NR3 AC087741.3-201ENST00000624270 1347 ntBASIC25■■□□□ 1.59
PTCHD1Q96NR3 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
PTCHD1Q96NR3 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
PTCHD1Q96NR3 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC24.98■■□□□ 1.59
PTCHD1Q96NR3 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
PTCHD1Q96NR3 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
PTCHD1Q96NR3 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC24.98■■□□□ 1.59
PTCHD1Q96NR3 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC24.97■■□□□ 1.59
PTCHD1Q96NR3 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC24.97■■□□□ 1.59
PTCHD1Q96NR3 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
PTCHD1Q96NR3 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC24.97■■□□□ 1.59
PTCHD1Q96NR3 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC24.97■■□□□ 1.59
PTCHD1Q96NR3 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
PTCHD1Q96NR3 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
PTCHD1Q96NR3 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC24.96■■□□□ 1.59
PTCHD1Q96NR3 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC24.95■■□□□ 1.59
PTCHD1Q96NR3 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
PTCHD1Q96NR3 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC24.94■■□□□ 1.58
PTCHD1Q96NR3 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
PTCHD1Q96NR3 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
PTCHD1Q96NR3 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC24.94■■□□□ 1.58
PTCHD1Q96NR3 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC24.94■■□□□ 1.58
PTCHD1Q96NR3 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC24.93■■□□□ 1.58
PTCHD1Q96NR3 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
PTCHD1Q96NR3 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC24.93■■□□□ 1.58
PTCHD1Q96NR3 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC24.93■■□□□ 1.58
PTCHD1Q96NR3 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
PTCHD1Q96NR3 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
PTCHD1Q96NR3 AC044849.2-201ENST00000606596 710 ntBASIC24.92■■□□□ 1.58
PTCHD1Q96NR3 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC24.91■■□□□ 1.58
PTCHD1Q96NR3 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
PTCHD1Q96NR3 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC24.91■■□□□ 1.58
PTCHD1Q96NR3 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC24.9■■□□□ 1.58
PTCHD1Q96NR3 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC24.9■■□□□ 1.58
PTCHD1Q96NR3 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
PTCHD1Q96NR3 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC24.88■■□□□ 1.57
PTCHD1Q96NR3 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC24.88■■□□□ 1.57
PTCHD1Q96NR3 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
PTCHD1Q96NR3 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC24.87■■□□□ 1.57
PTCHD1Q96NR3 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC24.87■■□□□ 1.57
PTCHD1Q96NR3 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC24.87■■□□□ 1.57
PTCHD1Q96NR3 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC24.87■■□□□ 1.57
PTCHD1Q96NR3 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
PTCHD1Q96NR3 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC24.86■■□□□ 1.57
PTCHD1Q96NR3 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
PTCHD1Q96NR3 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
PTCHD1Q96NR3 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC24.86■■□□□ 1.57
PTCHD1Q96NR3 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC24.85■■□□□ 1.57
PTCHD1Q96NR3 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC24.84■■□□□ 1.57
PTCHD1Q96NR3 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
PTCHD1Q96NR3 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC24.83■■□□□ 1.56
PTCHD1Q96NR3 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
PTCHD1Q96NR3 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
PTCHD1Q96NR3 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC24.8■■□□□ 1.56
PTCHD1Q96NR3 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
PTCHD1Q96NR3 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
PTCHD1Q96NR3 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
PTCHD1Q96NR3 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
PTCHD1Q96NR3 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
Retrieved 100 of 98,524 protein–RNA pairs in 48.5 ms