Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC21.3■■□□□ 1
CX3CL1P78423 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC21.29■■□□□ 1
CX3CL1P78423 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CX3CL1P78423 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC21.29■■□□□ 1
CX3CL1P78423 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
CX3CL1P78423 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC21.29■■□□□ 1
CX3CL1P78423 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC21.28■■□□□ 1
CX3CL1P78423 EBPL-202ENST00000378268 680 ntTSL 3 BASIC21.28■■□□□ 1
CX3CL1P78423 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC21.28■■□□□ 1
CX3CL1P78423 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
CX3CL1P78423 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
CX3CL1P78423 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CX3CL1P78423 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC21.26■□□□□ 0.99
CX3CL1P78423 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
CX3CL1P78423 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CX3CL1P78423 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CX3CL1P78423 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CX3CL1P78423 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC21.25■□□□□ 0.99
CX3CL1P78423 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC21.24■□□□□ 0.99
CX3CL1P78423 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CX3CL1P78423 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CX3CL1P78423 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC21.23■□□□□ 0.99
CX3CL1P78423 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CX3CL1P78423 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CX3CL1P78423 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CX3CL1P78423 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CX3CL1P78423 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
CX3CL1P78423 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC21.22■□□□□ 0.99
CX3CL1P78423 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CX3CL1P78423 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CX3CL1P78423 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CX3CL1P78423 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC21.19■□□□□ 0.98
CX3CL1P78423 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC21.19■□□□□ 0.98
CX3CL1P78423 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
CX3CL1P78423 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
CX3CL1P78423 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CX3CL1P78423 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CX3CL1P78423 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CX3CL1P78423 SUZ12P1-203ENST00000578195 985 ntBASIC21.18■□□□□ 0.98
CX3CL1P78423 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
CX3CL1P78423 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CX3CL1P78423 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC21.18■□□□□ 0.98
CX3CL1P78423 DENR-202ENST00000455982 1052 ntTSL 5 BASIC21.17■□□□□ 0.98
CX3CL1P78423 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
CX3CL1P78423 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CX3CL1P78423 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CX3CL1P78423 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CX3CL1P78423 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CX3CL1P78423 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CX3CL1P78423 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CX3CL1P78423 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
CX3CL1P78423 ABCB10P1-201ENST00000614297 2181 ntBASIC21.14■□□□□ 0.98
CX3CL1P78423 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
CX3CL1P78423 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC21.14■□□□□ 0.97
CX3CL1P78423 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC21.14■□□□□ 0.97
CX3CL1P78423 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
CX3CL1P78423 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CX3CL1P78423 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CX3CL1P78423 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CX3CL1P78423 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
CX3CL1P78423 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CX3CL1P78423 ABCB10P3-201ENST00000561950 2166 ntBASIC21.12■□□□□ 0.97
CX3CL1P78423 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CX3CL1P78423 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CX3CL1P78423 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CX3CL1P78423 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CX3CL1P78423 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
CX3CL1P78423 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CX3CL1P78423 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CX3CL1P78423 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
CX3CL1P78423 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CX3CL1P78423 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CX3CL1P78423 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CX3CL1P78423 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC21.09■□□□□ 0.97
CX3CL1P78423 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CX3CL1P78423 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CX3CL1P78423 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC21.08■□□□□ 0.97
CX3CL1P78423 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CX3CL1P78423 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CX3CL1P78423 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CX3CL1P78423 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
CX3CL1P78423 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CX3CL1P78423 MIR762-201ENST00000390236 83 ntBASIC21.05■□□□□ 0.96
CX3CL1P78423 SHF-206ENST00000560471 2499 ntTSL 5 BASIC21.04■□□□□ 0.96
CX3CL1P78423 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CX3CL1P78423 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CX3CL1P78423 CHML-205ENST00000638160 705 ntTSL 3 BASIC21.04■□□□□ 0.96
CX3CL1P78423 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CX3CL1P78423 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
CX3CL1P78423 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC21.03■□□□□ 0.96
CX3CL1P78423 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
CX3CL1P78423 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC21.03■□□□□ 0.96
CX3CL1P78423 AL135925.1-201ENST00000605920 1701 ntBASIC21.03■□□□□ 0.96
CX3CL1P78423 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CX3CL1P78423 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC21.02■□□□□ 0.96
CX3CL1P78423 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC21.02■□□□□ 0.96
CX3CL1P78423 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC21.02■□□□□ 0.96
CX3CL1P78423 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC21.02■□□□□ 0.96
CX3CL1P78423 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CX3CL1P78423 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC21.01■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 10.3 ms