Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 BRD4-212ENST00000630599 726 ntTSL 2 BASIC33.01■■■□□ 2.88
COL4A5P29400 DUX4L11-201ENST00000611504 1267 ntBASIC33.01■■■□□ 2.87
COL4A5P29400 DUX4L12-201ENST00000614593 1267 ntBASIC33.01■■■□□ 2.87
COL4A5P29400 DUX4L14-201ENST00000621227 1267 ntBASIC33.01■■■□□ 2.87
COL4A5P29400 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC33.01■■■□□ 2.87
COL4A5P29400 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC33.01■■■□□ 2.87
COL4A5P29400 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC33■■■□□ 2.87
COL4A5P29400 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC33■■■□□ 2.87
COL4A5P29400 AC108673.1-201ENST00000510422 1159 ntBASIC33■■■□□ 2.87
COL4A5P29400 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC32.99■■■□□ 2.87
COL4A5P29400 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC32.98■■■□□ 2.87
COL4A5P29400 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC32.98■■■□□ 2.87
COL4A5P29400 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC32.98■■■□□ 2.87
COL4A5P29400 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC32.98■■■□□ 2.87
COL4A5P29400 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC32.97■■■□□ 2.87
COL4A5P29400 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC32.97■■■□□ 2.87
COL4A5P29400 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC32.97■■■□□ 2.87
COL4A5P29400 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC32.97■■■□□ 2.87
COL4A5P29400 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC32.96■■■□□ 2.87
COL4A5P29400 LINC01971-201ENST00000617888 1048 ntBASIC32.96■■■□□ 2.87
COL4A5P29400 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC32.96■■■□□ 2.87
COL4A5P29400 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC32.95■■■□□ 2.87
COL4A5P29400 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC32.94■■■□□ 2.86
COL4A5P29400 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC32.94■■■□□ 2.86
COL4A5P29400 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC32.93■■■□□ 2.86
COL4A5P29400 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC32.93■■■□□ 2.86
COL4A5P29400 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC32.93■■■□□ 2.86
COL4A5P29400 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC32.93■■■□□ 2.86
COL4A5P29400 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC32.92■■■□□ 2.86
COL4A5P29400 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC32.91■■■□□ 2.86
COL4A5P29400 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC32.9■■■□□ 2.86
COL4A5P29400 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC32.9■■■□□ 2.86
COL4A5P29400 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC32.9■■■□□ 2.86
COL4A5P29400 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC32.89■■■□□ 2.86
COL4A5P29400 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC32.88■■■□□ 2.85
COL4A5P29400 AGPS-202ENST00000409888 815 ntTSL 4 BASIC32.88■■■□□ 2.85
COL4A5P29400 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC32.88■■■□□ 2.85
COL4A5P29400 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC32.87■■■□□ 2.85
COL4A5P29400 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC32.86■■■□□ 2.85
COL4A5P29400 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC32.86■■■□□ 2.85
COL4A5P29400 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC32.86■■■□□ 2.85
COL4A5P29400 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC32.86■■■□□ 2.85
COL4A5P29400 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC32.85■■■□□ 2.85
COL4A5P29400 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC32.85■■■□□ 2.85
COL4A5P29400 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC32.85■■■□□ 2.85
COL4A5P29400 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC32.83■■■□□ 2.85
COL4A5P29400 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC32.83■■■□□ 2.85
COL4A5P29400 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC32.83■■■□□ 2.85
COL4A5P29400 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC32.82■■■□□ 2.84
COL4A5P29400 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC32.82■■■□□ 2.84
COL4A5P29400 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC32.82■■■□□ 2.84
COL4A5P29400 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC32.81■■■□□ 2.84
COL4A5P29400 ABHD17AP3-201ENST00000503096 1137 ntBASIC32.81■■■□□ 2.84
COL4A5P29400 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC32.81■■■□□ 2.84
COL4A5P29400 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC32.8■■■□□ 2.84
COL4A5P29400 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC32.8■■■□□ 2.84
COL4A5P29400 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC32.79■■■□□ 2.84
COL4A5P29400 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC32.78■■■□□ 2.84
COL4A5P29400 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC32.77■■■□□ 2.84
COL4A5P29400 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC32.75■■■□□ 2.83
COL4A5P29400 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC32.74■■■□□ 2.83
COL4A5P29400 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC32.74■■■□□ 2.83
COL4A5P29400 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC32.74■■■□□ 2.83
COL4A5P29400 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC32.73■■■□□ 2.83
COL4A5P29400 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC32.73■■■□□ 2.83
COL4A5P29400 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC32.73■■■□□ 2.83
COL4A5P29400 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC32.72■■■□□ 2.83
COL4A5P29400 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC32.72■■■□□ 2.83
COL4A5P29400 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC32.72■■■□□ 2.83
COL4A5P29400 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC32.7■■■□□ 2.83
COL4A5P29400 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC32.7■■■□□ 2.83
COL4A5P29400 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC32.7■■■□□ 2.82
COL4A5P29400 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC32.68■■■□□ 2.82
COL4A5P29400 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC32.68■■■□□ 2.82
COL4A5P29400 METRNL-202ENST00000570778 967 ntTSL 5 BASIC32.68■■■□□ 2.82
COL4A5P29400 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC32.68■■■□□ 2.82
COL4A5P29400 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC32.67■■■□□ 2.82
COL4A5P29400 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC32.67■■■□□ 2.82
COL4A5P29400 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC32.66■■■□□ 2.82
COL4A5P29400 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC32.66■■■□□ 2.82
COL4A5P29400 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC32.66■■■□□ 2.82
COL4A5P29400 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC32.63■■■□□ 2.81
COL4A5P29400 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC32.63■■■□□ 2.81
COL4A5P29400 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC32.62■■■□□ 2.81
COL4A5P29400 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC32.62■■■□□ 2.81
COL4A5P29400 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC32.62■■■□□ 2.81
COL4A5P29400 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC32.61■■■□□ 2.81
COL4A5P29400 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC32.61■■■□□ 2.81
COL4A5P29400 DUX4L13-201ENST00000554103 1267 ntBASIC32.6■■■□□ 2.81
COL4A5P29400 DUX4L15-201ENST00000611059 1267 ntBASIC32.6■■■□□ 2.81
COL4A5P29400 DUX4L23-201ENST00000615195 1269 ntBASIC32.6■■■□□ 2.81
COL4A5P29400 DUX4L24-201ENST00000617576 1269 ntBASIC32.6■■■□□ 2.81
COL4A5P29400 DUX4L22-201ENST00000618238 1269 ntBASIC32.6■■■□□ 2.81
COL4A5P29400 DUX4L20-201ENST00000619712 1269 ntBASIC32.6■■■□□ 2.81
COL4A5P29400 DUX4L21-201ENST00000622058 1269 ntBASIC32.6■■■□□ 2.81
COL4A5P29400 DUX4L10-201ENST00000622460 1267 ntBASIC32.6■■■□□ 2.81
COL4A5P29400 DUX4L25-201ENST00000624915 1269 ntBASIC32.6■■■□□ 2.81
COL4A5P29400 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC32.59■■■□□ 2.81
COL4A5P29400 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC32.58■■■□□ 2.81
COL4A5P29400 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC32.56■■■□□ 2.8
Retrieved 100 of 98,524 protein–RNA pairs in 8.8 ms