Protein–RNA interactions for Protein: P0CH09

RPL40B, Ubiquitin-60S ribosomal protein L40, yeastyeast

Known RBP Predictions only

Length 128 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RPL40BP0CH09 YAL016C-AYAL016C-A 315 nt8.95□□□□□ -0.98
RPL40BP0CH09 PRY1YJL079C 900 nt8.92□□□□□ -0.98
RPL40BP0CH09 GSF2YML048W 1212 nt8.92□□□□□ -0.98
RPL40BP0CH09 YAT1YAR035W 2064 nt8.9□□□□□ -0.98
RPL40BP0CH09 ALP1YNL270C 1722 nt8.9□□□□□ -0.98
RPL40BP0CH09 RDN18-1RDN18-1 1800 nt8.89□□□□□ -0.99
RPL40BP0CH09 RDN18-2RDN18-2 1800 nt8.89□□□□□ -0.99
RPL40BP0CH09 HSL7YBR133C 2484 nt8.88□□□□□ -0.99
RPL40BP0CH09 YJL055WYJL055W 738 nt8.88□□□□□ -0.99
RPL40BP0CH09 PAU21YOR394W 495 nt8.87□□□□□ -0.99
RPL40BP0CH09 PAU22YPL282C 495 nt8.87□□□□□ -0.99
RPL40BP0CH09 STR3YGL184C 1398 nt8.86□□□□□ -0.99
RPL40BP0CH09 ZTA1YBR046C 1005 nt8.85□□□□□ -0.99
RPL40BP0CH09 AKR2YOR034C 2250 nt8.83□□□□□ -1
RPL40BP0CH09 YMR206WYMR206W 942 nt8.83□□□□□ -1
RPL40BP0CH09 RTN2YDL204W 1182 nt8.82□□□□□ -1
RPL40BP0CH09 SWM1YDR260C 513 nt8.82□□□□□ -1
RPL40BP0CH09 POT1YIL160C 1254 nt8.82□□□□□ -1
RPL40BP0CH09 YCR025CYCR025C 411 nt8.81□□□□□ -1
RPL40BP0CH09 HRA1HRA1 564 nt8.81□□□□□ -1
RPL40BP0CH09 YAR028WYAR028W 705 nt8.81□□□□□ -1
RPL40BP0CH09 ACO2YJL200C 2370 nt8.79□□□□□ -1
RPL40BP0CH09 MHF1YOL086W-A 273 nt8.79□□□□□ -1
RPL40BP0CH09 APS2YJR058C 444 nt8.78□□□□□ -1
RPL40BP0CH09 AQY2YLL052C 450 nt8.78□□□□□ -1
RPL40BP0CH09 YMR007WYMR007W 381 nt8.78□□□□□ -1
RPL40BP0CH09 RCR1YBR005W 642 nt8.77□□□□□ -1.01
RPL40BP0CH09 SPT20YOL148C 1815 nt8.77□□□□□ -1.01
RPL40BP0CH09 MTG2YHR168W 1557 nt8.75□□□□□ -1.01
RPL40BP0CH09 IGD1YFR017C 588 nt8.75□□□□□ -1.01
RPL40BP0CH09 GAP1YKR039W 1809 nt8.75□□□□□ -1.01
RPL40BP0CH09 EDC2YER035W 438 nt8.72□□□□□ -1.01
RPL40BP0CH09 LYS20YDL182W 1287 nt8.71□□□□□ -1.02
RPL40BP0CH09 INA1YLR413W 2028 nt8.7□□□□□ -1.02
RPL40BP0CH09 IPL1YPL209C 1104 nt8.7□□□□□ -1.02
RPL40BP0CH09 UGA4YDL210W 1716 nt8.7□□□□□ -1.02
RPL40BP0CH09 RDN25-1RDN25-1 3396 nt8.69□□□□□ -1.02
RPL40BP0CH09 RDN25-2RDN25-2 3396 nt8.69□□□□□ -1.02
RPL40BP0CH09 GAL3YDR009W 1563 nt8.69□□□□□ -1.02
RPL40BP0CH09 RPC82YPR190C 1965 nt8.68□□□□□ -1.02
RPL40BP0CH09 tA(AGC)DtA(AGC)D 73 nt8.68□□□□□ -1.02
RPL40BP0CH09 tA(AGC)FtA(AGC)F 73 nt8.68□□□□□ -1.02
RPL40BP0CH09 tA(AGC)GtA(AGC)G 73 nt8.68□□□□□ -1.02
RPL40BP0CH09 tA(AGC)HtA(AGC)H 73 nt8.68□□□□□ -1.02
RPL40BP0CH09 tA(AGC)JtA(AGC)J 73 nt8.68□□□□□ -1.02
RPL40BP0CH09 tA(AGC)K1tA(AGC)K1 73 nt8.68□□□□□ -1.02
RPL40BP0CH09 tA(AGC)K2tA(AGC)K2 73 nt8.68□□□□□ -1.02
RPL40BP0CH09 tA(AGC)LtA(AGC)L 73 nt8.68□□□□□ -1.02
RPL40BP0CH09 tA(AGC)M1tA(AGC)M1 73 nt8.68□□□□□ -1.02
RPL40BP0CH09 tA(AGC)M2tA(AGC)M2 73 nt8.68□□□□□ -1.02
RPL40BP0CH09 tA(AGC)PtA(AGC)P 73 nt8.68□□□□□ -1.02
RPL40BP0CH09 SNZ1YMR096W 894 nt8.68□□□□□ -1.02
RPL40BP0CH09 SDH8YBR269C 417 nt8.68□□□□□ -1.02
RPL40BP0CH09 ARP6YLR085C 1317 nt8.68□□□□□ -1.02
RPL40BP0CH09 GRH1YDR517W 1119 nt8.67□□□□□ -1.02
RPL40BP0CH09 NIF3YGL221C 867 nt8.67□□□□□ -1.02
RPL40BP0CH09 DIF1YLR437C 402 nt8.66□□□□□ -1.02
RPL40BP0CH09 RIB7YBR153W 735 nt8.66□□□□□ -1.02
RPL40BP0CH09 HIF1YLL022C 1158 nt8.65□□□□□ -1.02
RPL40BP0CH09 YPL247CYPL247C 1572 nt8.65□□□□□ -1.03
RPL40BP0CH09 OYE3YPL171C 1203 nt8.64□□□□□ -1.03
RPL40BP0CH09 YJL118WYJL118W 660 nt8.63□□□□□ -1.03
RPL40BP0CH09 YPR126CYPR126C 309 nt8.63□□□□□ -1.03
RPL40BP0CH09 LSB5YCL034W 1065 nt8.63□□□□□ -1.03
RPL40BP0CH09 HEL2YDR266C 1920 nt8.62□□□□□ -1.03
RPL40BP0CH09 CTI6YPL181W 1521 nt8.61□□□□□ -1.03
RPL40BP0CH09 YDR510C-AYDR510C-A 117 nt8.6□□□□□ -1.03
RPL40BP0CH09 CSM1YCR086W 573 nt8.58□□□□□ -1.04
RPL40BP0CH09 PLB1YMR008C 1995 nt8.58□□□□□ -1.04
RPL40BP0CH09 PRM5YIL117C 957 nt8.57□□□□□ -1.04
RPL40BP0CH09 PRE5YMR314W 705 nt8.57□□□□□ -1.04
RPL40BP0CH09 IML3YBR107C 738 nt8.57□□□□□ -1.04
RPL40BP0CH09 RIM8YGL045W 1629 nt8.56□□□□□ -1.04
RPL40BP0CH09 PCP1YGR101W 1041 nt8.56□□□□□ -1.04
RPL40BP0CH09 RPT5YOR117W 1305 nt8.55□□□□□ -1.04
RPL40BP0CH09 KAE1YKR038C 1161 nt8.54□□□□□ -1.04
RPL40BP0CH09 YPL251WYPL251W 303 nt8.54□□□□□ -1.04
RPL40BP0CH09 BAP3YDR046C 1815 nt8.54□□□□□ -1.04
RPL40BP0CH09 SPG1YGR236C 288 nt8.52□□□□□ -1.05
RPL40BP0CH09 FLX1YIL134W 936 nt8.52□□□□□ -1.05
RPL40BP0CH09 YGL114WYGL114W 2178 nt8.51□□□□□ -1.05
RPL40BP0CH09 SED1YDR077W 1017 nt8.5□□□□□ -1.05
RPL40BP0CH09 SER2YGR208W 930 nt8.5□□□□□ -1.05
RPL40BP0CH09 NUC1YJL208C 990 nt8.49□□□□□ -1.05
RPL40BP0CH09 MUP1YGR055W 1725 nt8.49□□□□□ -1.05
RPL40BP0CH09 DAK2YFL053W 1776 nt8.48□□□□□ -1.05
RPL40BP0CH09 CDD1YLR245C 429 nt8.48□□□□□ -1.05
RPL40BP0CH09 ZRT3YKL175W 1512 nt8.48□□□□□ -1.05
RPL40BP0CH09 MRP1YDR347W 966 nt8.47□□□□□ -1.05
RPL40BP0CH09 YNL024CYNL024C 741 nt8.47□□□□□ -1.05
RPL40BP0CH09 HTS1YPR033C 1641 nt8.45□□□□□ -1.06
RPL40BP0CH09 SAM3YPL274W 1764 nt8.45□□□□□ -1.06
RPL40BP0CH09 YER190C-AYER190C-A 576 nt8.44□□□□□ -1.06
RPL40BP0CH09 YGR296C-AYGR296C-A 576 nt8.44□□□□□ -1.06
RPL40BP0CH09 YML133W-AYML133W-A 576 nt8.44□□□□□ -1.06
RPL40BP0CH09 YNL339W-AYNL339W-A 576 nt8.44□□□□□ -1.06
RPL40BP0CH09 YPL283W-AYPL283W-A 576 nt8.44□□□□□ -1.06
RPL40BP0CH09 SAM35YHR083W 990 nt8.43□□□□□ -1.06
RPL40BP0CH09 NAS2YIL007C 663 nt8.42□□□□□ -1.06
RPL40BP0CH09 UTR1YJR049C 1593 nt8.42□□□□□ -1.06
Retrieved 100 of 7,029 protein–RNA pairs in 11.1 ms