RNA–Protein interactions for RNA: YOL148C

SPT20, Transcript of Subunit of the SAGA transcriptional regulatory complex, yeastyeast

Gene SPT20, Length 1,815 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SPT20YOL148C SPA2P23201 1466 aaKnown RBP14.8□□□□□ -0.04
SPT20YOL148C SGS1P35187 1447 aa14.78□□□□□ -0.04
SPT20YOL148C SSN2P38931 1420 aa14.53□□□□□ -0.08
SPT20YOL148C INO80P53115 1489 aa14.23□□□□□ -0.13
SPT20YOL148C DRS1P32892 752 aaKnown RBP14.2□□□□□ -0.14
SPT20YOL148C SKI3P17883 1432 aaKnown RBP14.08□□□□□ -0.16
SPT20YOL148C NOP2P40991 618 aaKnown RBP13.71□□□□□ -0.21
SPT20YOL148C TCB3Q03640 1545 aaKnown RBP13.68□□□□□ -0.22
SPT20YOL148C CHD1P32657 1468 aa13.53□□□□□ -0.24
SPT20YOL148C NSR1P27476 414 aaKnown RBP RIP-Chip data13.49□□□□□ -0.25not detected
SPT20YOL148C MMS22Q06164 1454 aa13.49□□□□□ -0.25
SPT20YOL148C TY1B-DR4Q07793 1604 aa13.36□□□□□ -0.27
SPT20YOL148C BFR2Q06631 534 aaKnown RBP13.36□□□□□ -0.27
SPT20YOL148C HSL1P34244 1518 aa13.34□□□□□ -0.27
SPT20YOL148C XRN1P22147 1528 aaKnown RBP13.34□□□□□ -0.27
SPT20YOL148C SPT6P23615 1451 aaKnown RBP13.29□□□□□ -0.28
SPT20YOL148C UFD4P33202 1483 aa13.21□□□□□ -0.3
SPT20YOL148C HIR3P47171 1648 aa13.16□□□□□ -0.3
SPT20YOL148C THO2P53552 1597 aaKnown RBP13.14□□□□□ -0.31
SPT20YOL148C REV3P14284 1504 aa13.1□□□□□ -0.31
SPT20YOL148C RSE1Q04693 1361 aaKnown RBP13.09□□□□□ -0.31
SPT20YOL148C SIN3P22579 1536 aa13.05□□□□□ -0.32
SPT20YOL148C TRM732Q03496 1420 aa13.05□□□□□ -0.32
SPT20YOL148C IKI3Q06706 1349 aaKnown RBP13.04□□□□□ -0.32
SPT20YOL148C SPP41P38904 1435 aa13.03□□□□□ -0.32
SPT20YOL148C ENP1P38333 483 aaKnown RBP13.03□□□□□ -0.32
SPT20YOL148C SAS10Q12136 610 aaPredicted RBP13.02□□□□□ -0.32
SPT20YOL148C SSK2P53599 1579 aa13.02□□□□□ -0.33
SPT20YOL148C YTA7P40340 1379 aa13.01□□□□□ -0.33
SPT20YOL148C STU1P38198 1513 aa13.01□□□□□ -0.33
SPT20YOL148C TAF2P23255 1407 aa12.99□□□□□ -0.33
SPT20YOL148C TFA1P36100 482 aa12.96□□□□□ -0.33
SPT20YOL148C MYO2P19524 1574 aaKnown RBP12.95□□□□□ -0.34
SPT20YOL148C MTC1P47018 478 aaKnown RBP12.92□□□□□ -0.34
SPT20YOL148C POL1P13382 1468 aa12.92□□□□□ -0.34
SPT20YOL148C POL5P39985 1022 aaKnown RBP12.89□□□□□ -0.35
SPT20YOL148C ESP1Q03018 1630 aa12.86□□□□□ -0.35
SPT20YOL148C MON2P48563 1636 aaPredicted RBP12.83□□□□□ -0.36
SPT20YOL148C BPT1P14772 1559 aa12.8□□□□□ -0.36
SPT20YOL148C TAF7Q05021 590 aa12.78□□□□□ -0.36
SPT20YOL148C SCC2Q04002 1493 aa12.78□□□□□ -0.36
SPT20YOL148C SSM4P40318 1319 aa12.77□□□□□ -0.36
SPT20YOL148C NUP170P38181 1502 aa12.76□□□□□ -0.37
SPT20YOL148C STH1P32597 1359 aa12.76□□□□□ -0.37
SPT20YOL148C SEC3P33332 1336 aaKnown RBP12.76□□□□□ -0.37
SPT20YOL148C MYO4P32492 1471 aa12.72□□□□□ -0.37
SPT20YOL148C CAB3P36076 571 aa12.72□□□□□ -0.37
SPT20YOL148C ECM5Q03214 1411 aa12.71□□□□□ -0.38
SPT20YOL148C SPT7P35177 1332 aa12.7□□□□□ -0.38
SPT20YOL148C SMC4Q12267 1418 aa12.68□□□□□ -0.38
SPT20YOL148C SWR1Q05471 1514 aa12.68□□□□□ -0.38
SPT20YOL148C DNA2P38859 1522 aa12.67□□□□□ -0.38
SPT20YOL148C YOR1P53049 1477 aa12.65□□□□□ -0.39
SPT20YOL148C YPK9Q12697 1472 aa12.65□□□□□ -0.39
SPT20YOL148C EBP2P36049 427 aaKnown RBP12.62□□□□□ -0.39
SPT20YOL148C PAN1P32521 1480 aa12.62□□□□□ -0.39
SPT20YOL148C RKR1Q04781 1562 aa12.61□□□□□ -0.39
SPT20YOL148C RTT106P40161 455 aa12.61□□□□□ -0.39
SPT20YOL148C BUD4P47136 1447 aa12.59□□□□□ -0.39
SPT20YOL148C SNQ2P32568 1501 aaKnown RBP12.58□□□□□ -0.4
SPT20YOL148C PRS1P32895 427 aaKnown RBP12.55□□□□□ -0.4
SPT20YOL148C MLP2P40457 1679 aa12.5□□□□□ -0.41
SPT20YOL148C IFH1P39520 1085 aa12.5□□□□□ -0.41
SPT20YOL148C GEA1P47102 1408 aaPredicted RBP12.48□□□□□ -0.41
SPT20YOL148C YPR148CQ06523 435 aa12.48□□□□□ -0.41
SPT20YOL148C TSC11P40061 1430 aa12.48□□□□□ -0.41
SPT20YOL148C PDR10P51533 1564 aa12.46□□□□□ -0.41
SPT20YOL148C ATG2P53855 1592 aa12.45□□□□□ -0.42
SPT20YOL148C TOP2P06786 1428 aaKnown RBP12.42□□□□□ -0.42
SPT20YOL148C PDR15Q04182 1529 aaKnown RBP12.42□□□□□ -0.42
SPT20YOL148C YCF1P39109 1515 aaKnown RBP12.4□□□□□ -0.42
SPT20YOL148C RPO31P04051 1460 aa12.39□□□□□ -0.43
SPT20YOL148C KOG1P38873 1557 aa12.37□□□□□ -0.43
SPT20YOL148C PEP1P32319 1579 aa12.36□□□□□ -0.43
SPT20YOL148C LEU3P08638 886 aa12.33□□□□□ -0.44
SPT20YOL148C SRB8P25648 1427 aa12.32□□□□□ -0.44
SPT20YOL148C YLR419WQ06698 1435 aaKnown RBP12.28□□□□□ -0.44
SPT20YOL148C ULS1Q08562 1619 aa12.26□□□□□ -0.45
SPT20YOL148C RQC2Q12532 1038 aaKnown RBP12.26□□□□□ -0.45
SPT20YOL148C PSD2P53037 1138 aaKnown RBP12.25□□□□□ -0.45
SPT20YOL148C VPS15P22219 1454 aa12.25□□□□□ -0.45
SPT20YOL148C NUP159P40477 1460 aa12.24□□□□□ -0.45
SPT20YOL148C CLC1P17891 233 aa12.23□□□□□ -0.45
SPT20YOL148C MHP1P43638 1398 aa12.22□□□□□ -0.45
SPT20YOL148C TY3B-GQ99315 1547 aa12.22□□□□□ -0.45
SPT20YOL148C IME2P32581 645 aa12.21□□□□□ -0.45
SPT20YOL148C TY1B-DR3Q99231 1755 aa12.21□□□□□ -0.45
SPT20YOL148C CFT1Q06632 1357 aaKnown RBP12.2□□□□□ -0.46
SPT20YOL148C DNF1P32660 1571 aa12.18□□□□□ -0.46
SPT20YOL148C TY2B-LR1P0C2J3 1770 aa12.16□□□□□ -0.46
SPT20YOL148C TY2B-FP0CX63 1770 aa12.16□□□□□ -0.46
SPT20YOL148C TY2B-GR2P0CX64 1770 aa12.16□□□□□ -0.46
SPT20YOL148C TY2B-CP25384 1770 aa12.16□□□□□ -0.46
SPT20YOL148C TY2B-DR2Q03494 1770 aa12.16□□□□□ -0.46
SPT20YOL148C TY1B-DR1Q03855 1755 aa12.16□□□□□ -0.46
SPT20YOL148C TY2B-DR3Q07791 1770 aaKnown RBP12.16□□□□□ -0.46
SPT20YOL148C TY2B-OR1Q12113 1770 aa12.16□□□□□ -0.46
SPT20YOL148C TY2B-DR1Q12472 1770 aa12.16□□□□□ -0.46
SPT20YOL148C TY2B-OR2Q12501 1770 aa12.16□□□□□ -0.46
SPT20YOL148C RPC31P17890 251 aa12.14□□□□□ -0.47
Retrieved 100 of 5,963 RNA–protein pairs in 12.7 ms