Protein–RNA interactions for Protein: Q9NUD5

ZCCHC3, Zinc finger CCHC domain-containing protein 3, humanhuman

Known RBP Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZCCHC3Q9NUD5 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
ZCCHC3Q9NUD5 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC19.74■□□□□ 0.75
ZCCHC3Q9NUD5 AC105265.2-201ENST00000467189 838 ntBASIC19.74■□□□□ 0.75
ZCCHC3Q9NUD5 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
ZCCHC3Q9NUD5 NME4-211ENST00000620944 1193 ntTSL 2 BASIC19.74■□□□□ 0.75
ZCCHC3Q9NUD5 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
ZCCHC3Q9NUD5 STX5-203ENST00000394690 1568 ntTSL 5 BASIC19.74■□□□□ 0.75
ZCCHC3Q9NUD5 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
ZCCHC3Q9NUD5 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
ZCCHC3Q9NUD5 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
ZCCHC3Q9NUD5 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC19.73■□□□□ 0.75
ZCCHC3Q9NUD5 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC19.73■□□□□ 0.75
ZCCHC3Q9NUD5 MIR638-201ENST00000385237 100 ntBASIC19.73■□□□□ 0.75
ZCCHC3Q9NUD5 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
ZCCHC3Q9NUD5 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC19.73■□□□□ 0.75
ZCCHC3Q9NUD5 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
ZCCHC3Q9NUD5 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC19.73■□□□□ 0.75
ZCCHC3Q9NUD5 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC19.73■□□□□ 0.75
ZCCHC3Q9NUD5 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC19.73■□□□□ 0.75
ZCCHC3Q9NUD5 MIR6084-201ENST00000622012 110 ntBASIC19.73■□□□□ 0.75
ZCCHC3Q9NUD5 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
ZCCHC3Q9NUD5 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC19.73■□□□□ 0.75
ZCCHC3Q9NUD5 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC19.73■□□□□ 0.75
ZCCHC3Q9NUD5 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC19.73■□□□□ 0.75
ZCCHC3Q9NUD5 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC19.73■□□□□ 0.75
ZCCHC3Q9NUD5 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
ZCCHC3Q9NUD5 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
ZCCHC3Q9NUD5 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
ZCCHC3Q9NUD5 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
ZCCHC3Q9NUD5 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
ZCCHC3Q9NUD5 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
ZCCHC3Q9NUD5 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
ZCCHC3Q9NUD5 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
ZCCHC3Q9NUD5 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
ZCCHC3Q9NUD5 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
ZCCHC3Q9NUD5 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC19.72■□□□□ 0.75
ZCCHC3Q9NUD5 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
ZCCHC3Q9NUD5 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
ZCCHC3Q9NUD5 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
ZCCHC3Q9NUD5 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC19.72■□□□□ 0.75
ZCCHC3Q9NUD5 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC19.72■□□□□ 0.75
ZCCHC3Q9NUD5 MTURN-203ENST00000409688 843 ntTSL 2 BASIC19.72■□□□□ 0.75
ZCCHC3Q9NUD5 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC19.72■□□□□ 0.75
ZCCHC3Q9NUD5 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC19.72■□□□□ 0.75
ZCCHC3Q9NUD5 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC19.72■□□□□ 0.75
ZCCHC3Q9NUD5 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC19.72■□□□□ 0.75
ZCCHC3Q9NUD5 AL049796.1-201ENST00000565336 1766 ntBASIC19.72■□□□□ 0.75
ZCCHC3Q9NUD5 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC19.72■□□□□ 0.75
ZCCHC3Q9NUD5 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC19.72■□□□□ 0.75
ZCCHC3Q9NUD5 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
ZCCHC3Q9NUD5 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
ZCCHC3Q9NUD5 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
ZCCHC3Q9NUD5 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
ZCCHC3Q9NUD5 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
ZCCHC3Q9NUD5 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC19.71■□□□□ 0.75
ZCCHC3Q9NUD5 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
ZCCHC3Q9NUD5 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
ZCCHC3Q9NUD5 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC19.71■□□□□ 0.75
ZCCHC3Q9NUD5 IRS3P-201ENST00000223076 1006 ntBASIC19.71■□□□□ 0.75
ZCCHC3Q9NUD5 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC19.71■□□□□ 0.75
ZCCHC3Q9NUD5 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
ZCCHC3Q9NUD5 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC19.71■□□□□ 0.75
ZCCHC3Q9NUD5 TPRG1LP1-201ENST00000598702 760 ntBASIC19.71■□□□□ 0.75
ZCCHC3Q9NUD5 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
ZCCHC3Q9NUD5 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
ZCCHC3Q9NUD5 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC19.71■□□□□ 0.75
ZCCHC3Q9NUD5 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
ZCCHC3Q9NUD5 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
ZCCHC3Q9NUD5 PALM-207ENST00000590161 2137 ntTSL 4 BASIC19.7■□□□□ 0.74
ZCCHC3Q9NUD5 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
ZCCHC3Q9NUD5 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
ZCCHC3Q9NUD5 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
ZCCHC3Q9NUD5 RARG-204ENST00000543726 1779 ntTSL 2 BASIC19.7■□□□□ 0.74
ZCCHC3Q9NUD5 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
ZCCHC3Q9NUD5 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC19.69■□□□□ 0.74
ZCCHC3Q9NUD5 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
ZCCHC3Q9NUD5 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
ZCCHC3Q9NUD5 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC19.69■□□□□ 0.74
ZCCHC3Q9NUD5 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
ZCCHC3Q9NUD5 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
ZCCHC3Q9NUD5 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
ZCCHC3Q9NUD5 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
ZCCHC3Q9NUD5 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
ZCCHC3Q9NUD5 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
ZCCHC3Q9NUD5 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
ZCCHC3Q9NUD5 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC19.69■□□□□ 0.74
ZCCHC3Q9NUD5 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
ZCCHC3Q9NUD5 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
ZCCHC3Q9NUD5 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
ZCCHC3Q9NUD5 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC19.68■□□□□ 0.74
ZCCHC3Q9NUD5 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
ZCCHC3Q9NUD5 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
ZCCHC3Q9NUD5 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
ZCCHC3Q9NUD5 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
ZCCHC3Q9NUD5 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
ZCCHC3Q9NUD5 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
ZCCHC3Q9NUD5 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
ZCCHC3Q9NUD5 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
ZCCHC3Q9NUD5 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
ZCCHC3Q9NUD5 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms