Protein–RNA interactions for Protein: Q99727

TIMP4, Metalloproteinase inhibitor 4, humanhuman

Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP4Q99727 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC19.29■□□□□ 0.68
TIMP4Q99727 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
TIMP4Q99727 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC19.29■□□□□ 0.68
TIMP4Q99727 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
TIMP4Q99727 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC19.29■□□□□ 0.68
TIMP4Q99727 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC19.29■□□□□ 0.68
TIMP4Q99727 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
TIMP4Q99727 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TIMP4Q99727 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
TIMP4Q99727 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
TIMP4Q99727 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
TIMP4Q99727 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC19.29■□□□□ 0.68
TIMP4Q99727 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
TIMP4Q99727 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
TIMP4Q99727 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
TIMP4Q99727 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC19.28■□□□□ 0.68
TIMP4Q99727 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
TIMP4Q99727 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
TIMP4Q99727 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TIMP4Q99727 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
TIMP4Q99727 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
TIMP4Q99727 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC19.28■□□□□ 0.68
TIMP4Q99727 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC19.28■□□□□ 0.68
TIMP4Q99727 AC104187.1-201ENST00000607510 612 ntBASIC19.28■□□□□ 0.68
TIMP4Q99727 MFF-207ENST00000409565 1548 ntTSL 2 BASIC19.28■□□□□ 0.68
TIMP4Q99727 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TIMP4Q99727 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC19.28■□□□□ 0.68
TIMP4Q99727 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
TIMP4Q99727 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TIMP4Q99727 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
TIMP4Q99727 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC19.28■□□□□ 0.68
TIMP4Q99727 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
TIMP4Q99727 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
TIMP4Q99727 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
TIMP4Q99727 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
TIMP4Q99727 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
TIMP4Q99727 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
TIMP4Q99727 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC19.27■□□□□ 0.68
TIMP4Q99727 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC19.27■□□□□ 0.68
TIMP4Q99727 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
TIMP4Q99727 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
TIMP4Q99727 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
TIMP4Q99727 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
TIMP4Q99727 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
TIMP4Q99727 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
TIMP4Q99727 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
TIMP4Q99727 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
TIMP4Q99727 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC19.26■□□□□ 0.67
TIMP4Q99727 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TIMP4Q99727 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC19.26■□□□□ 0.67
TIMP4Q99727 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TIMP4Q99727 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TIMP4Q99727 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TIMP4Q99727 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
TIMP4Q99727 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
TIMP4Q99727 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
TIMP4Q99727 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC19.26■□□□□ 0.67
TIMP4Q99727 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC19.26■□□□□ 0.67
TIMP4Q99727 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC19.26■□□□□ 0.67
TIMP4Q99727 AC080038.1-201ENST00000611274 1154 ntBASIC19.26■□□□□ 0.67
TIMP4Q99727 GAS2L1P2-201ENST00000436355 1356 ntBASIC19.26■□□□□ 0.67
TIMP4Q99727 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC19.26■□□□□ 0.67
TIMP4Q99727 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
TIMP4Q99727 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC19.26■□□□□ 0.67
TIMP4Q99727 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
TIMP4Q99727 AC073130.3-201ENST00000624389 2278 ntBASIC19.26■□□□□ 0.67
TIMP4Q99727 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TIMP4Q99727 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
TIMP4Q99727 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TIMP4Q99727 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
TIMP4Q99727 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
TIMP4Q99727 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
TIMP4Q99727 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC19.25■□□□□ 0.67
TIMP4Q99727 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC19.25■□□□□ 0.67
TIMP4Q99727 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC19.25■□□□□ 0.67
TIMP4Q99727 FXN-202ENST00000396364 980 ntTSL 5 BASIC19.25■□□□□ 0.67
TIMP4Q99727 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
TIMP4Q99727 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TIMP4Q99727 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC19.25■□□□□ 0.67
TIMP4Q99727 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC19.25■□□□□ 0.67
TIMP4Q99727 WWOX-218ENST00000627394 894 ntTSL 5 BASIC19.25■□□□□ 0.67
TIMP4Q99727 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
TIMP4Q99727 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TIMP4Q99727 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TIMP4Q99727 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
TIMP4Q99727 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC19.25■□□□□ 0.67
TIMP4Q99727 Z98882.1-201ENST00000622160 2253 ntBASIC19.25■□□□□ 0.67
TIMP4Q99727 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TIMP4Q99727 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC19.24■□□□□ 0.67
TIMP4Q99727 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC19.24■□□□□ 0.67
TIMP4Q99727 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TIMP4Q99727 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
TIMP4Q99727 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
TIMP4Q99727 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TIMP4Q99727 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TIMP4Q99727 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TIMP4Q99727 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC19.24■□□□□ 0.67
TIMP4Q99727 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TIMP4Q99727 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
TIMP4Q99727 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms