Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
KRT40Q6A162 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC24.36■■□□□ 1.49
KRT40Q6A162 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC24.36■■□□□ 1.49
KRT40Q6A162 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC24.36■■□□□ 1.49
KRT40Q6A162 CPT2-209ENST00000636935 803 ntTSL 5 BASIC24.36■■□□□ 1.49
KRT40Q6A162 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC24.36■■□□□ 1.49
KRT40Q6A162 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC24.36■■□□□ 1.49
KRT40Q6A162 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC24.36■■□□□ 1.49
KRT40Q6A162 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
KRT40Q6A162 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC24.35■■□□□ 1.49
KRT40Q6A162 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
KRT40Q6A162 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC24.35■■□□□ 1.49
KRT40Q6A162 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC24.35■■□□□ 1.49
KRT40Q6A162 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
KRT40Q6A162 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
KRT40Q6A162 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC24.35■■□□□ 1.49
KRT40Q6A162 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC24.35■■□□□ 1.49
KRT40Q6A162 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC24.35■■□□□ 1.49
KRT40Q6A162 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC24.35■■□□□ 1.49
KRT40Q6A162 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC24.35■■□□□ 1.49
KRT40Q6A162 CCDC92B-201ENST00000575506 885 ntBASIC24.35■■□□□ 1.49
KRT40Q6A162 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
KRT40Q6A162 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
KRT40Q6A162 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC24.35■■□□□ 1.49
KRT40Q6A162 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
KRT40Q6A162 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC24.34■■□□□ 1.49
KRT40Q6A162 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
KRT40Q6A162 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC24.34■■□□□ 1.49
KRT40Q6A162 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
KRT40Q6A162 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
KRT40Q6A162 NTF6G-201ENST00000591094 616 ntBASIC24.34■■□□□ 1.49
KRT40Q6A162 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
KRT40Q6A162 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
KRT40Q6A162 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
KRT40Q6A162 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
KRT40Q6A162 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
KRT40Q6A162 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
KRT40Q6A162 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC24.33■■□□□ 1.49
KRT40Q6A162 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC24.33■■□□□ 1.49
KRT40Q6A162 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC24.33■■□□□ 1.49
KRT40Q6A162 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC24.33■■□□□ 1.49
KRT40Q6A162 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC24.33■■□□□ 1.49
KRT40Q6A162 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
KRT40Q6A162 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
KRT40Q6A162 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
KRT40Q6A162 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
KRT40Q6A162 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC24.33■■□□□ 1.49
KRT40Q6A162 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC24.33■■□□□ 1.49
KRT40Q6A162 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC24.33■■□□□ 1.49
KRT40Q6A162 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC24.33■■□□□ 1.49
KRT40Q6A162 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
KRT40Q6A162 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC24.32■■□□□ 1.48
KRT40Q6A162 RARG-204ENST00000543726 1779 ntTSL 2 BASIC24.32■■□□□ 1.48
KRT40Q6A162 MFF-207ENST00000409565 1548 ntTSL 2 BASIC24.32■■□□□ 1.48
KRT40Q6A162 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
KRT40Q6A162 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
KRT40Q6A162 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC24.32■■□□□ 1.48
KRT40Q6A162 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC24.32■■□□□ 1.48
KRT40Q6A162 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC24.32■■□□□ 1.48
KRT40Q6A162 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC24.32■■□□□ 1.48
KRT40Q6A162 AC123595.1-201ENST00000440769 1046 ntBASIC24.32■■□□□ 1.48
KRT40Q6A162 RNF146-206ENST00000480444 843 ntTSL 2 BASIC24.32■■□□□ 1.48
KRT40Q6A162 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC24.32■■□□□ 1.48
KRT40Q6A162 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC24.32■■□□□ 1.48
KRT40Q6A162 STX5-203ENST00000394690 1568 ntTSL 5 BASIC24.32■■□□□ 1.48
KRT40Q6A162 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC24.32■■□□□ 1.48
KRT40Q6A162 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
KRT40Q6A162 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC24.31■■□□□ 1.48
KRT40Q6A162 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
KRT40Q6A162 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC24.31■■□□□ 1.48
KRT40Q6A162 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC24.31■■□□□ 1.48
KRT40Q6A162 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC24.31■■□□□ 1.48
KRT40Q6A162 ME3-201ENST00000323418 1068 ntTSL 5 BASIC24.31■■□□□ 1.48
KRT40Q6A162 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC24.31■■□□□ 1.48
KRT40Q6A162 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC24.31■■□□□ 1.48
KRT40Q6A162 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC24.31■■□□□ 1.48
KRT40Q6A162 EEF1DP3-203ENST00000566025 782 ntBASIC24.31■■□□□ 1.48
KRT40Q6A162 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC24.31■■□□□ 1.48
KRT40Q6A162 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
KRT40Q6A162 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC24.31■■□□□ 1.48
KRT40Q6A162 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC24.31■■□□□ 1.48
KRT40Q6A162 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC24.31■■□□□ 1.48
KRT40Q6A162 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC24.31■■□□□ 1.48
KRT40Q6A162 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
KRT40Q6A162 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
KRT40Q6A162 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
KRT40Q6A162 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC24.3■■□□□ 1.48
KRT40Q6A162 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC24.3■■□□□ 1.48
KRT40Q6A162 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
KRT40Q6A162 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
KRT40Q6A162 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC24.3■■□□□ 1.48
KRT40Q6A162 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
KRT40Q6A162 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC24.3■■□□□ 1.48
KRT40Q6A162 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
KRT40Q6A162 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC24.3■■□□□ 1.48
KRT40Q6A162 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
KRT40Q6A162 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
KRT40Q6A162 PALM-207ENST00000590161 2137 ntTSL 4 BASIC24.29■■□□□ 1.48
KRT40Q6A162 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC24.29■■□□□ 1.48
KRT40Q6A162 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC24.29■■□□□ 1.48
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms