Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC23.1■■□□□ 1.29
CCDC40Q4G0X9 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
CCDC40Q4G0X9 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
CCDC40Q4G0X9 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC23.1■■□□□ 1.29
CCDC40Q4G0X9 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC23.09■■□□□ 1.29
CCDC40Q4G0X9 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
CCDC40Q4G0X9 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC23.09■■□□□ 1.29
CCDC40Q4G0X9 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
CCDC40Q4G0X9 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
CCDC40Q4G0X9 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
CCDC40Q4G0X9 PARN-205ENST00000539279 1557 ntTSL 2 BASIC23.09■■□□□ 1.29
CCDC40Q4G0X9 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC23.09■■□□□ 1.29
CCDC40Q4G0X9 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC23.09■■□□□ 1.29
CCDC40Q4G0X9 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
CCDC40Q4G0X9 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC23.08■■□□□ 1.29
CCDC40Q4G0X9 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
CCDC40Q4G0X9 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
CCDC40Q4G0X9 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC23.08■■□□□ 1.29
CCDC40Q4G0X9 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC23.08■■□□□ 1.29
CCDC40Q4G0X9 AC012414.1-201ENST00000556676 535 ntBASIC23.08■■□□□ 1.29
CCDC40Q4G0X9 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC23.08■■□□□ 1.29
CCDC40Q4G0X9 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC23.08■■□□□ 1.29
CCDC40Q4G0X9 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC23.08■■□□□ 1.29
CCDC40Q4G0X9 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
CCDC40Q4G0X9 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC23.08■■□□□ 1.29
CCDC40Q4G0X9 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
CCDC40Q4G0X9 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC23.08■■□□□ 1.28
CCDC40Q4G0X9 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC23.07■■□□□ 1.28
CCDC40Q4G0X9 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
CCDC40Q4G0X9 NARF-205ENST00000412079 1760 ntTSL 5 BASIC23.07■■□□□ 1.28
CCDC40Q4G0X9 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
CCDC40Q4G0X9 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
CCDC40Q4G0X9 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC23.07■■□□□ 1.28
CCDC40Q4G0X9 STOX2-205ENST00000513034 807 ntTSL 3 BASIC23.07■■□□□ 1.28
CCDC40Q4G0X9 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC23.07■■□□□ 1.28
CCDC40Q4G0X9 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
CCDC40Q4G0X9 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CCDC40Q4G0X9 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC23.06■■□□□ 1.28
CCDC40Q4G0X9 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CCDC40Q4G0X9 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CCDC40Q4G0X9 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
CCDC40Q4G0X9 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CCDC40Q4G0X9 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CCDC40Q4G0X9 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC23.06■■□□□ 1.28
CCDC40Q4G0X9 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC23.06■■□□□ 1.28
CCDC40Q4G0X9 HYI-206ENST00000372434 1025 ntTSL 5 BASIC23.06■■□□□ 1.28
CCDC40Q4G0X9 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
CCDC40Q4G0X9 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CCDC40Q4G0X9 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
CCDC40Q4G0X9 AC005837.3-201ENST00000612163 286 ntBASIC23.06■■□□□ 1.28
CCDC40Q4G0X9 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC23.06■■□□□ 1.28
CCDC40Q4G0X9 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
CCDC40Q4G0X9 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
CCDC40Q4G0X9 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
CCDC40Q4G0X9 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC23.05■■□□□ 1.28
CCDC40Q4G0X9 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
CCDC40Q4G0X9 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC23.05■■□□□ 1.28
CCDC40Q4G0X9 AL354811.1-201ENST00000610286 706 ntBASIC23.05■■□□□ 1.28
CCDC40Q4G0X9 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
CCDC40Q4G0X9 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
CCDC40Q4G0X9 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
CCDC40Q4G0X9 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
CCDC40Q4G0X9 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC23.05■■□□□ 1.28
CCDC40Q4G0X9 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
CCDC40Q4G0X9 STX5-203ENST00000394690 1568 ntTSL 5 BASIC23.05■■□□□ 1.28
CCDC40Q4G0X9 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
CCDC40Q4G0X9 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
CCDC40Q4G0X9 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC23.04■■□□□ 1.28
CCDC40Q4G0X9 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC23.04■■□□□ 1.28
CCDC40Q4G0X9 AL049796.1-201ENST00000565336 1766 ntBASIC23.04■■□□□ 1.28
CCDC40Q4G0X9 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
CCDC40Q4G0X9 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
CCDC40Q4G0X9 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC23.04■■□□□ 1.28
CCDC40Q4G0X9 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC23.04■■□□□ 1.28
CCDC40Q4G0X9 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
CCDC40Q4G0X9 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC23.04■■□□□ 1.28
CCDC40Q4G0X9 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
CCDC40Q4G0X9 RHOF-204ENST00000537265 699 ntTSL 2 BASIC23.04■■□□□ 1.28
CCDC40Q4G0X9 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC23.04■■□□□ 1.28
CCDC40Q4G0X9 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC23.04■■□□□ 1.28
CCDC40Q4G0X9 PALM-207ENST00000590161 2137 ntTSL 4 BASIC23.04■■□□□ 1.28
CCDC40Q4G0X9 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC23.04■■□□□ 1.28
CCDC40Q4G0X9 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC23.04■■□□□ 1.28
CCDC40Q4G0X9 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
CCDC40Q4G0X9 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
CCDC40Q4G0X9 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC23.04■■□□□ 1.28
CCDC40Q4G0X9 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC23.04■■□□□ 1.28
CCDC40Q4G0X9 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC23.03■■□□□ 1.28
CCDC40Q4G0X9 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC23.03■■□□□ 1.28
CCDC40Q4G0X9 NT5C3AP1-201ENST00000394500 1012 ntBASIC23.03■■□□□ 1.28
CCDC40Q4G0X9 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC23.03■■□□□ 1.28
CCDC40Q4G0X9 MIR6084-201ENST00000622012 110 ntBASIC23.03■■□□□ 1.28
CCDC40Q4G0X9 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
CCDC40Q4G0X9 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
CCDC40Q4G0X9 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC23.03■■□□□ 1.28
CCDC40Q4G0X9 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC23.03■■□□□ 1.28
CCDC40Q4G0X9 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
CCDC40Q4G0X9 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC23.02■■□□□ 1.28
CCDC40Q4G0X9 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
CCDC40Q4G0X9 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms