Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC17.03■□□□□ 0.32
CDX1P47902 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC17.03■□□□□ 0.32
CDX1P47902 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
CDX1P47902 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CDX1P47902 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CDX1P47902 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
CDX1P47902 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
CDX1P47902 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC17.03■□□□□ 0.32
CDX1P47902 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC17.03■□□□□ 0.32
CDX1P47902 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CDX1P47902 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC17.02■□□□□ 0.32
CDX1P47902 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
CDX1P47902 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CDX1P47902 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CDX1P47902 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CDX1P47902 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CDX1P47902 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CDX1P47902 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CDX1P47902 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC17.02■□□□□ 0.32
CDX1P47902 AL354811.1-201ENST00000610286 706 ntBASIC17.02■□□□□ 0.32
CDX1P47902 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
CDX1P47902 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC17.02■□□□□ 0.31
CDX1P47902 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CDX1P47902 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC17.02■□□□□ 0.31
CDX1P47902 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
CDX1P47902 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CDX1P47902 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CDX1P47902 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CDX1P47902 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC17.02■□□□□ 0.31
CDX1P47902 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC17.01■□□□□ 0.31
CDX1P47902 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC17.01■□□□□ 0.31
CDX1P47902 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC17.01■□□□□ 0.31
CDX1P47902 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CDX1P47902 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC17.01■□□□□ 0.31
CDX1P47902 COMT-203ENST00000403184 2217 ntTSL 2 BASIC17.01■□□□□ 0.31
CDX1P47902 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC17.01■□□□□ 0.31
CDX1P47902 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CDX1P47902 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC17.01■□□□□ 0.31
CDX1P47902 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC17.01■□□□□ 0.31
CDX1P47902 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CDX1P47902 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CDX1P47902 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC17.01■□□□□ 0.31
CDX1P47902 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC17.01■□□□□ 0.31
CDX1P47902 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC17.01■□□□□ 0.31
CDX1P47902 MIR5787-201ENST00000611784 55 ntBASIC17.01■□□□□ 0.31
CDX1P47902 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC17.01■□□□□ 0.31
CDX1P47902 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CDX1P47902 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC17.01■□□□□ 0.31
CDX1P47902 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC17.01■□□□□ 0.31
CDX1P47902 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC17.01■□□□□ 0.31
CDX1P47902 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CDX1P47902 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC17.01■□□□□ 0.31
CDX1P47902 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
CDX1P47902 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CDX1P47902 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
CDX1P47902 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC17■□□□□ 0.31
CDX1P47902 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC17■□□□□ 0.31
CDX1P47902 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
CDX1P47902 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC17■□□□□ 0.31
CDX1P47902 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CDX1P47902 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC17■□□□□ 0.31
CDX1P47902 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC17■□□□□ 0.31
CDX1P47902 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CDX1P47902 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CDX1P47902 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC17■□□□□ 0.31
CDX1P47902 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CDX1P47902 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC17■□□□□ 0.31
CDX1P47902 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
CDX1P47902 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
CDX1P47902 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
CDX1P47902 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
CDX1P47902 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC17■□□□□ 0.31
CDX1P47902 AL031602.1-201ENST00000633169 911 ntBASIC17■□□□□ 0.31
CDX1P47902 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CDX1P47902 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
CDX1P47902 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC17■□□□□ 0.31
CDX1P47902 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC17■□□□□ 0.31
CDX1P47902 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC17■□□□□ 0.31
CDX1P47902 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CDX1P47902 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CDX1P47902 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CDX1P47902 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CDX1P47902 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC16.99■□□□□ 0.31
CDX1P47902 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CDX1P47902 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC16.99■□□□□ 0.31
CDX1P47902 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
CDX1P47902 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CDX1P47902 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CDX1P47902 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC16.99■□□□□ 0.31
CDX1P47902 AC139530.1-201ENST00000575312 1977 ntBASIC16.99■□□□□ 0.31
CDX1P47902 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
CDX1P47902 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CDX1P47902 ADM-207ENST00000530439 1839 ntTSL 2 BASIC16.99■□□□□ 0.31
CDX1P47902 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC16.99■□□□□ 0.31
CDX1P47902 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC16.99■□□□□ 0.31
CDX1P47902 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CDX1P47902 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC16.99■□□□□ 0.31
CDX1P47902 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CDX1P47902 AC012414.1-201ENST00000556676 535 ntBASIC16.99■□□□□ 0.31
CDX1P47902 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC16.99■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms