Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
SMKR1H3BMG3 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
SMKR1H3BMG3 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
SMKR1H3BMG3 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC15.34■□□□□ 0.05
SMKR1H3BMG3 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SMKR1H3BMG3 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
SMKR1H3BMG3 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
SMKR1H3BMG3 PALM-207ENST00000590161 2137 ntTSL 4 BASIC15.34■□□□□ 0.05
SMKR1H3BMG3 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SMKR1H3BMG3 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
SMKR1H3BMG3 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC15.33■□□□□ 0.05
SMKR1H3BMG3 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.05
SMKR1H3BMG3 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC15.33■□□□□ 0.05
SMKR1H3BMG3 EI24-211ENST00000534546 1544 ntTSL 2 BASIC15.33■□□□□ 0.05
SMKR1H3BMG3 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
SMKR1H3BMG3 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
SMKR1H3BMG3 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
SMKR1H3BMG3 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC15.33■□□□□ 0.05
SMKR1H3BMG3 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SMKR1H3BMG3 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC15.33■□□□□ 0.04
SMKR1H3BMG3 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
SMKR1H3BMG3 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
SMKR1H3BMG3 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SMKR1H3BMG3 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
SMKR1H3BMG3 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
SMKR1H3BMG3 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SMKR1H3BMG3 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
SMKR1H3BMG3 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC15.33■□□□□ 0.04
SMKR1H3BMG3 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC15.33■□□□□ 0.04
SMKR1H3BMG3 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC15.33■□□□□ 0.04
SMKR1H3BMG3 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SMKR1H3BMG3 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC15.33■□□□□ 0.04
SMKR1H3BMG3 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
SMKR1H3BMG3 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC15.33■□□□□ 0.04
SMKR1H3BMG3 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC15.33■□□□□ 0.04
SMKR1H3BMG3 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
SMKR1H3BMG3 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
SMKR1H3BMG3 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC15.33■□□□□ 0.04
SMKR1H3BMG3 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC15.33■□□□□ 0.04
SMKR1H3BMG3 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
SMKR1H3BMG3 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC15.33■□□□□ 0.04
SMKR1H3BMG3 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC15.32■□□□□ 0.04
SMKR1H3BMG3 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SMKR1H3BMG3 PARN-205ENST00000539279 1557 ntTSL 2 BASIC15.32■□□□□ 0.04
SMKR1H3BMG3 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SMKR1H3BMG3 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC15.32■□□□□ 0.04
SMKR1H3BMG3 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
SMKR1H3BMG3 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SMKR1H3BMG3 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SMKR1H3BMG3 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SMKR1H3BMG3 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
SMKR1H3BMG3 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
SMKR1H3BMG3 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
SMKR1H3BMG3 MIR6722-201ENST00000617286 78 ntBASIC15.32■□□□□ 0.04
SMKR1H3BMG3 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SMKR1H3BMG3 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SMKR1H3BMG3 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SMKR1H3BMG3 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC15.32■□□□□ 0.04
SMKR1H3BMG3 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
SMKR1H3BMG3 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SMKR1H3BMG3 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SMKR1H3BMG3 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC15.32■□□□□ 0.04
SMKR1H3BMG3 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC15.32■□□□□ 0.04
SMKR1H3BMG3 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC15.32■□□□□ 0.04
SMKR1H3BMG3 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SMKR1H3BMG3 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
SMKR1H3BMG3 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC15.32■□□□□ 0.04
SMKR1H3BMG3 AC006128.1-201ENST00000624704 1661 ntBASIC15.32■□□□□ 0.04
SMKR1H3BMG3 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SMKR1H3BMG3 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
SMKR1H3BMG3 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SMKR1H3BMG3 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SMKR1H3BMG3 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SMKR1H3BMG3 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC15.31■□□□□ 0.04
SMKR1H3BMG3 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SMKR1H3BMG3 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SMKR1H3BMG3 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC15.31■□□□□ 0.04
SMKR1H3BMG3 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
SMKR1H3BMG3 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC15.31■□□□□ 0.04
SMKR1H3BMG3 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SMKR1H3BMG3 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC15.31■□□□□ 0.04
SMKR1H3BMG3 AC074183.2-201ENST00000623112 922 ntBASIC15.31■□□□□ 0.04
SMKR1H3BMG3 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SMKR1H3BMG3 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SMKR1H3BMG3 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SMKR1H3BMG3 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC15.31■□□□□ 0.04
SMKR1H3BMG3 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SMKR1H3BMG3 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
SMKR1H3BMG3 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC15.31■□□□□ 0.04
SMKR1H3BMG3 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
SMKR1H3BMG3 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SMKR1H3BMG3 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SMKR1H3BMG3 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC15.31■□□□□ 0.04
SMKR1H3BMG3 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
SMKR1H3BMG3 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
SMKR1H3BMG3 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
SMKR1H3BMG3 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
SMKR1H3BMG3 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SMKR1H3BMG3 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SMKR1H3BMG3 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 17.2 ms