Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC19.15■□□□□ 0.66
COL6A6A6NMZ7 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
COL6A6A6NMZ7 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC19.15■□□□□ 0.66
COL6A6A6NMZ7 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC19.15■□□□□ 0.66
COL6A6A6NMZ7 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL6A6A6NMZ7 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
COL6A6A6NMZ7 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
COL6A6A6NMZ7 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
COL6A6A6NMZ7 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
COL6A6A6NMZ7 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC19.14■□□□□ 0.66
COL6A6A6NMZ7 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
COL6A6A6NMZ7 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC19.14■□□□□ 0.66
COL6A6A6NMZ7 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL6A6A6NMZ7 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL6A6A6NMZ7 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC19.14■□□□□ 0.65
COL6A6A6NMZ7 TSPY15P-201ENST00000457163 923 ntBASIC19.14■□□□□ 0.65
COL6A6A6NMZ7 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC19.14■□□□□ 0.65
COL6A6A6NMZ7 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC19.14■□□□□ 0.65
COL6A6A6NMZ7 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
COL6A6A6NMZ7 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL6A6A6NMZ7 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
COL6A6A6NMZ7 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
COL6A6A6NMZ7 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC19.13■□□□□ 0.65
COL6A6A6NMZ7 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL6A6A6NMZ7 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC19.13■□□□□ 0.65
COL6A6A6NMZ7 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC19.13■□□□□ 0.65
COL6A6A6NMZ7 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL6A6A6NMZ7 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL6A6A6NMZ7 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
COL6A6A6NMZ7 AC004812.2-201ENST00000611079 2094 ntBASIC19.13■□□□□ 0.65
COL6A6A6NMZ7 CRAT-202ENST00000393384 973 ntTSL 2 BASIC19.13■□□□□ 0.65
COL6A6A6NMZ7 AC053503.5-201ENST00000601508 636 ntBASIC19.13■□□□□ 0.65
COL6A6A6NMZ7 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
COL6A6A6NMZ7 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL6A6A6NMZ7 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC19.12■□□□□ 0.65
COL6A6A6NMZ7 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC19.12■□□□□ 0.65
COL6A6A6NMZ7 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL6A6A6NMZ7 SOX15-203ENST00000570788 1093 ntBASIC19.12■□□□□ 0.65
COL6A6A6NMZ7 KLF2-202ENST00000592003 564 ntTSL 3 BASIC19.12■□□□□ 0.65
COL6A6A6NMZ7 MTDHP1-201ENST00000605323 784 ntBASIC19.12■□□□□ 0.65
COL6A6A6NMZ7 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC19.12■□□□□ 0.65
COL6A6A6NMZ7 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL6A6A6NMZ7 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL6A6A6NMZ7 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL6A6A6NMZ7 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC19.12■□□□□ 0.65
COL6A6A6NMZ7 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC19.12■□□□□ 0.65
COL6A6A6NMZ7 AC100791.3-201ENST00000617619 330 ntBASIC19.12■□□□□ 0.65
COL6A6A6NMZ7 FGF8-207ENST00000618991 856 ntTSL 3 BASIC19.12■□□□□ 0.65
COL6A6A6NMZ7 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
COL6A6A6NMZ7 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL6A6A6NMZ7 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL6A6A6NMZ7 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC19.11■□□□□ 0.65
COL6A6A6NMZ7 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL6A6A6NMZ7 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
COL6A6A6NMZ7 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
COL6A6A6NMZ7 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC19.11■□□□□ 0.65
COL6A6A6NMZ7 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL6A6A6NMZ7 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL6A6A6NMZ7 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
COL6A6A6NMZ7 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
COL6A6A6NMZ7 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL6A6A6NMZ7 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL6A6A6NMZ7 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL6A6A6NMZ7 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL6A6A6NMZ7 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL6A6A6NMZ7 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC19.11■□□□□ 0.65
COL6A6A6NMZ7 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
COL6A6A6NMZ7 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC19.11■□□□□ 0.65
COL6A6A6NMZ7 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL6A6A6NMZ7 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC19.11■□□□□ 0.65
COL6A6A6NMZ7 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC19.11■□□□□ 0.65
COL6A6A6NMZ7 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC19.11■□□□□ 0.65
COL6A6A6NMZ7 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
COL6A6A6NMZ7 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
COL6A6A6NMZ7 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL6A6A6NMZ7 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC19.11■□□□□ 0.65
COL6A6A6NMZ7 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
COL6A6A6NMZ7 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL6A6A6NMZ7 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
COL6A6A6NMZ7 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC19.1■□□□□ 0.65
COL6A6A6NMZ7 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
COL6A6A6NMZ7 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC19.1■□□□□ 0.65
COL6A6A6NMZ7 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
COL6A6A6NMZ7 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL6A6A6NMZ7 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC19.1■□□□□ 0.65
COL6A6A6NMZ7 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC19.1■□□□□ 0.65
COL6A6A6NMZ7 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC19.1■□□□□ 0.65
COL6A6A6NMZ7 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC19.1■□□□□ 0.65
COL6A6A6NMZ7 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC19.1■□□□□ 0.65
COL6A6A6NMZ7 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
COL6A6A6NMZ7 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL6A6A6NMZ7 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
COL6A6A6NMZ7 SLC29A4P2-201ENST00000504749 1089 ntBASIC19.09■□□□□ 0.65
COL6A6A6NMZ7 P4HB-223ENST00000576390 439 ntTSL 4 BASIC19.09■□□□□ 0.65
COL6A6A6NMZ7 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC19.09■□□□□ 0.65
COL6A6A6NMZ7 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL6A6A6NMZ7 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL6A6A6NMZ7 THRA-202ENST00000394121 2260 ntTSL 2 BASIC19.09■□□□□ 0.65
COL6A6A6NMZ7 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
COL6A6A6NMZ7 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC19.09■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 18.1 ms