Protein–RNA interactions for Protein: Q9UM47

NOTCH3, Neurogenic locus notch homolog protein 3, humanhuman

Predictions only

Length 2,321 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOTCH3Q9UM47 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
NOTCH3Q9UM47 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
NOTCH3Q9UM47 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
NOTCH3Q9UM47 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC16.19■□□□□ 0.18
NOTCH3Q9UM47 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
NOTCH3Q9UM47 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
NOTCH3Q9UM47 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
NOTCH3Q9UM47 ESRRAP1-201ENST00000400596 1257 ntBASIC16.19■□□□□ 0.18
NOTCH3Q9UM47 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC16.19■□□□□ 0.18
NOTCH3Q9UM47 AC008694.1-202ENST00000636953 945 ntBASIC16.19■□□□□ 0.18
NOTCH3Q9UM47 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
NOTCH3Q9UM47 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
NOTCH3Q9UM47 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
NOTCH3Q9UM47 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
NOTCH3Q9UM47 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC16.19■□□□□ 0.18
NOTCH3Q9UM47 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC16.18■□□□□ 0.18
NOTCH3Q9UM47 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
NOTCH3Q9UM47 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC16.18■□□□□ 0.18
NOTCH3Q9UM47 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
NOTCH3Q9UM47 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
NOTCH3Q9UM47 GCSHP5-201ENST00000443090 522 ntBASIC16.18■□□□□ 0.18
NOTCH3Q9UM47 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
NOTCH3Q9UM47 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC16.18■□□□□ 0.18
NOTCH3Q9UM47 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
NOTCH3Q9UM47 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC16.18■□□□□ 0.18
NOTCH3Q9UM47 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC16.18■□□□□ 0.18
NOTCH3Q9UM47 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
NOTCH3Q9UM47 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
NOTCH3Q9UM47 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
NOTCH3Q9UM47 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
NOTCH3Q9UM47 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
NOTCH3Q9UM47 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
NOTCH3Q9UM47 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC16.18■□□□□ 0.18
NOTCH3Q9UM47 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
NOTCH3Q9UM47 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
NOTCH3Q9UM47 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
NOTCH3Q9UM47 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
NOTCH3Q9UM47 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
NOTCH3Q9UM47 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
NOTCH3Q9UM47 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC16.17■□□□□ 0.18
NOTCH3Q9UM47 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
NOTCH3Q9UM47 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
NOTCH3Q9UM47 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
NOTCH3Q9UM47 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC16.17■□□□□ 0.18
NOTCH3Q9UM47 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC16.17■□□□□ 0.18
NOTCH3Q9UM47 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
NOTCH3Q9UM47 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
NOTCH3Q9UM47 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC16.17■□□□□ 0.18
NOTCH3Q9UM47 MYC-209ENST00000641252 345 ntBASIC16.17■□□□□ 0.18
NOTCH3Q9UM47 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
NOTCH3Q9UM47 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC16.17■□□□□ 0.18
NOTCH3Q9UM47 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
NOTCH3Q9UM47 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC16.17■□□□□ 0.18
NOTCH3Q9UM47 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
NOTCH3Q9UM47 OR7E47P-201ENST00000546390 1422 ntBASIC16.17■□□□□ 0.18
NOTCH3Q9UM47 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
NOTCH3Q9UM47 AP004607.7-201ENST00000527152 1677 ntBASIC16.17■□□□□ 0.18
NOTCH3Q9UM47 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
NOTCH3Q9UM47 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
NOTCH3Q9UM47 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
NOTCH3Q9UM47 RHEB-204ENST00000472642 900 ntTSL 3 BASIC16.17■□□□□ 0.18
NOTCH3Q9UM47 ARL16-209ENST00000573715 763 ntTSL 3 BASIC16.17■□□□□ 0.18
NOTCH3Q9UM47 ARL16-211ENST00000576135 694 ntTSL 3 BASIC16.17■□□□□ 0.18
NOTCH3Q9UM47 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
NOTCH3Q9UM47 LINC00526-201ENST00000581067 1875 ntBASIC16.17■□□□□ 0.18
NOTCH3Q9UM47 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
NOTCH3Q9UM47 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
NOTCH3Q9UM47 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
NOTCH3Q9UM47 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
NOTCH3Q9UM47 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
NOTCH3Q9UM47 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
NOTCH3Q9UM47 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
NOTCH3Q9UM47 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
NOTCH3Q9UM47 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC16.16■□□□□ 0.18
NOTCH3Q9UM47 KRT18P20-201ENST00000548986 1279 ntBASIC16.16■□□□□ 0.18
NOTCH3Q9UM47 INO80E-214ENST00000620599 515 ntTSL 2 BASIC16.16■□□□□ 0.18
NOTCH3Q9UM47 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
NOTCH3Q9UM47 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
NOTCH3Q9UM47 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
NOTCH3Q9UM47 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
NOTCH3Q9UM47 AC092068.2-201ENST00000590491 1708 ntBASIC16.16■□□□□ 0.18
NOTCH3Q9UM47 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
NOTCH3Q9UM47 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
NOTCH3Q9UM47 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
NOTCH3Q9UM47 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
NOTCH3Q9UM47 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
NOTCH3Q9UM47 ISCU-212ENST00000547005 795 ntTSL 3 BASIC16.16■□□□□ 0.18
NOTCH3Q9UM47 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC16.16■□□□□ 0.18
NOTCH3Q9UM47 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
NOTCH3Q9UM47 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
NOTCH3Q9UM47 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
NOTCH3Q9UM47 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
NOTCH3Q9UM47 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
NOTCH3Q9UM47 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
NOTCH3Q9UM47 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
NOTCH3Q9UM47 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
NOTCH3Q9UM47 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
NOTCH3Q9UM47 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
NOTCH3Q9UM47 AC007322.4-201ENST00000509611 723 ntBASIC16.15■□□□□ 0.18
NOTCH3Q9UM47 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 15.1 ms