Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC19.3■□□□□ 0.68
MSX1P28360 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC19.3■□□□□ 0.68
MSX1P28360 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
MSX1P28360 GXYLT1P5-201ENST00000614548 1189 ntBASIC19.3■□□□□ 0.68
MSX1P28360 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
MSX1P28360 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
MSX1P28360 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
MSX1P28360 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
MSX1P28360 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
MSX1P28360 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
MSX1P28360 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC19.3■□□□□ 0.68
MSX1P28360 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
MSX1P28360 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
MSX1P28360 TUB-203ENST00000534099 1759 ntTSL 2 BASIC19.29■□□□□ 0.68
MSX1P28360 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
MSX1P28360 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
MSX1P28360 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
MSX1P28360 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC19.29■□□□□ 0.68
MSX1P28360 STK25-234ENST00000535007 2459 ntTSL 2 BASIC19.29■□□□□ 0.68
MSX1P28360 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
MSX1P28360 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
MSX1P28360 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
MSX1P28360 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC19.29■□□□□ 0.68
MSX1P28360 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
MSX1P28360 RNF146-206ENST00000480444 843 ntTSL 2 BASIC19.29■□□□□ 0.68
MSX1P28360 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC19.29■□□□□ 0.68
MSX1P28360 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC19.29■□□□□ 0.68
MSX1P28360 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC19.29■□□□□ 0.68
MSX1P28360 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
MSX1P28360 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC19.29■□□□□ 0.68
MSX1P28360 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC19.29■□□□□ 0.68
MSX1P28360 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
MSX1P28360 AP004607.4-201ENST00000530158 1459 ntBASIC19.28■□□□□ 0.68
MSX1P28360 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
MSX1P28360 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
MSX1P28360 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
MSX1P28360 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
MSX1P28360 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
MSX1P28360 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
MSX1P28360 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC19.28■□□□□ 0.68
MSX1P28360 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC19.28■□□□□ 0.68
MSX1P28360 AC026185.1-201ENST00000445748 174 ntBASIC19.28■□□□□ 0.68
MSX1P28360 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
MSX1P28360 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC19.28■□□□□ 0.68
MSX1P28360 TESC-206ENST00000541210 936 ntTSL 3 BASIC19.28■□□□□ 0.68
MSX1P28360 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
MSX1P28360 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC19.28■□□□□ 0.68
MSX1P28360 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
MSX1P28360 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
MSX1P28360 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
MSX1P28360 AC244015.2-201ENST00000616358 1861 ntBASIC19.28■□□□□ 0.68
MSX1P28360 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
MSX1P28360 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
MSX1P28360 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC19.28■□□□□ 0.68
MSX1P28360 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
MSX1P28360 AC004854.2-201ENST00000608450 1441 ntBASIC19.27■□□□□ 0.68
MSX1P28360 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC19.27■□□□□ 0.68
MSX1P28360 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC19.27■□□□□ 0.68
MSX1P28360 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
MSX1P28360 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC19.27■□□□□ 0.68
MSX1P28360 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC19.27■□□□□ 0.68
MSX1P28360 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC19.27■□□□□ 0.68
MSX1P28360 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
MSX1P28360 BID-214ENST00000617586 542 ntTSL 5 BASIC19.27■□□□□ 0.68
MSX1P28360 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
MSX1P28360 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
MSX1P28360 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
MSX1P28360 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
MSX1P28360 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
MSX1P28360 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
MSX1P28360 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.67
MSX1P28360 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.67
MSX1P28360 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
MSX1P28360 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.67
MSX1P28360 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
MSX1P28360 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
MSX1P28360 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
MSX1P28360 KRT19P1-201ENST00000405746 1186 ntBASIC19.26■□□□□ 0.67
MSX1P28360 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC19.26■□□□□ 0.67
MSX1P28360 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC19.26■□□□□ 0.67
MSX1P28360 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC19.26■□□□□ 0.67
MSX1P28360 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC19.26■□□□□ 0.67
MSX1P28360 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC19.26■□□□□ 0.67
MSX1P28360 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
MSX1P28360 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC19.26■□□□□ 0.67
MSX1P28360 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC19.26■□□□□ 0.67
MSX1P28360 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
MSX1P28360 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
MSX1P28360 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
MSX1P28360 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
MSX1P28360 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
MSX1P28360 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
MSX1P28360 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
MSX1P28360 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
MSX1P28360 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
MSX1P28360 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC19.25■□□□□ 0.67
MSX1P28360 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC19.25■□□□□ 0.67
MSX1P28360 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
MSX1P28360 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC19.25■□□□□ 0.67
MSX1P28360 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms