Protein–RNA interactions for Protein: P12956

XRCC6, X-ray repair cross-complementing protein 6, humanhuman

Known RBP eCLIP

Length 609 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC6P12956 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.676e-7■□□□□ 11.3
XRCC6P12956 SPPL2B-209ENST00000613503 3456 ntAPPRIS P4 TSL 1 (best) BASIC17.68■□□□□ 0.426e-7■□□□□ 11.3
XRCC6P12956 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.384e-8■□□□□ 11.3
XRCC6P12956 CHTF18-204ENST00000440239 1801 ntTSL 1 (best)25.7■■□□□ 1.77e-7■□□□□ 11.2
XRCC6P12956 CHTF18-218ENST00000569270 711 ntTSL 521.46■■□□□ 1.037e-7■□□□□ 11.2
XRCC6P12956 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.837e-7■□□□□ 11.2
XRCC6P12956 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.77e-7■□□□□ 11.2
XRCC6P12956 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.617e-7■□□□□ 11.2
XRCC6P12956 CHTF18-208ENST00000471202 4494 ntTSL 217.08■□□□□ 0.337e-7■□□□□ 11.2
XRCC6P12956 CHTF18-207ENST00000464728 4088 ntTSL 216.49■□□□□ 0.237e-7■□□□□ 11.2
XRCC6P12956 CHTF18-201ENST00000262315 3090 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.217e-7■□□□□ 11.2
XRCC6P12956 GPC3-203ENST00000406757 836 ntTSL 29.26□□□□□ -0.936e-6■□□□□ 11.2
XRCC6P12956 SNORA78-201ENST00000459373 127 ntBASIC21.6■■□□□ 1.057e-30■□□□□ 11.2
XRCC6P12956 SNHG9-202ENST00000564014 471 ntBASIC18.42■□□□□ 0.547e-30■□□□□ 11.2
XRCC6P12956 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC16.57■□□□□ 0.247e-30■□□□□ 11.2
XRCC6P12956 TMC6-220ENST00000591756 475 ntTSL 219.91■□□□□ 0.785e-9■□□□□ 11.2
XRCC6P12956 TMC6-217ENST00000590934 386 ntTSL 513.35□□□□□ -0.275e-9■□□□□ 11.2
XRCC6P12956 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC36.27■■■■□ 3.44e-9■□□□□ 11.2
XRCC6P12956 GPI-208ENST00000588991 2021 ntTSL 224.4■■□□□ 1.54e-9■□□□□ 11.2
XRCC6P12956 GPI-205ENST00000586425 1799 ntTSL 5 BASIC18.72■□□□□ 0.594e-9■□□□□ 11.2
XRCC6P12956 GPI-202ENST00000415930 4000 ntTSL 2 BASIC9.31□□□□□ -0.924e-9■□□□□ 11.2
XRCC6P12956 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.215e-6■□□□□ 11.2
XRCC6P12956 UBAC1-204ENST00000478485 773 ntTSL 226.78■■□□□ 1.885e-6■□□□□ 11.2
XRCC6P12956 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC23.49■■□□□ 1.353e-18■□□□□ 11.1
XRCC6P12956 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC20.88■□□□□ 0.933e-18■□□□□ 11.1
XRCC6P12956 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.53e-18■□□□□ 11.1
XRCC6P12956 MLLT10-201ENST00000307729 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.433e-18■□□□□ 11.1
XRCC6P12956 MLLT10-215ENST00000495130 744 ntTSL 313.74□□□□□ -0.213e-18■□□□□ 11.1
XRCC6P12956 MLLT10-211ENST00000471315 319 ntTSL 312.96□□□□□ -0.333e-18■□□□□ 11.1
XRCC6P12956 MLLT10-217ENST00000631589 4955 ntAPPRIS ALT2 TSL 5 BASIC7.63□□□□□ -1.193e-18■□□□□ 11.1
XRCC6P12956 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.592e-6■□□□□ 11.1
XRCC6P12956 MAN2A2-204ENST00000558161 4918 ntTSL 1 (best)14.08□□□□□ -0.162e-6■□□□□ 11.1
XRCC6P12956 FASN-201ENST00000306749 8565 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.061e-6■□□□□ 11.1
XRCC6P12956 FASN-206ENST00000634990 8407 ntAPPRIS ALT1 TSL 5 BASIC15.11■□□□□ 0.011e-6■□□□□ 11.1
XRCC6P12956 LINC02476-201ENST00000426413 1577 ntTSL 2 BASIC5.72□□□□□ -1.493e-8■□□□□ 11
XRCC6P12956 LINC02476-202ENST00000431071 559 ntTSL 4 BASIC5.31□□□□□ -1.563e-8■□□□□ 11
XRCC6P12956 TRIM28-204ENST00000594806 861 ntTSL 528.85■■■□□ 2.213e-9■□□□□ 11
XRCC6P12956 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC28.42■■■□□ 2.143e-9■□□□□ 11
XRCC6P12956 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.843e-9■□□□□ 11
XRCC6P12956 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC26.04■■□□□ 1.769e-7■□□□□ 11
XRCC6P12956 ST20-MTHFS-202ENST00000494999 632 ntTSL 324.36■■□□□ 1.499e-7■□□□□ 11
XRCC6P12956 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC21.05■□□□□ 0.969e-7■□□□□ 11
XRCC6P12956 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.859e-7■□□□□ 11
XRCC6P12956 TRIM28-203ENST00000593582 533 ntTSL 317.01■□□□□ 0.313e-9■□□□□ 11
XRCC6P12956 BCL2L1-208ENST00000450273 894 ntTSL 320.09■□□□□ 0.813e-8■□□□□ 11
XRCC6P12956 BCL2L1-201ENST00000307677 2610 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.323e-8■□□□□ 11
XRCC6P12956 BCL2L1-202ENST00000376055 2383 ntTSL 2 BASIC16.86■□□□□ 0.293e-8■□□□□ 11
XRCC6P12956 BCL2L1-203ENST00000376062 2578 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.253e-8■□□□□ 11
XRCC6P12956 PPP1R12C-203ENST00000586197 472 ntTSL 517.25■□□□□ 0.355e-8■□□□□ 11
XRCC6P12956 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC32.1■■■□□ 2.733e-6■□□□□ 11
XRCC6P12956 DUS1L-211ENST00000578907 1084 ntTSL 330.96■■■□□ 2.553e-6■□□□□ 11
XRCC6P12956 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC29.95■■■□□ 2.393e-6■□□□□ 11
XRCC6P12956 CTBP2-206ENST00000460976 603 ntTSL 529.35■■■□□ 2.293e-6■□□□□ 11
XRCC6P12956 DUS1L-206ENST00000577907 648 ntTSL 329.03■■■□□ 2.243e-6■□□□□ 11
XRCC6P12956 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC28.96■■■□□ 2.233e-6■□□□□ 11
XRCC6P12956 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC28.87■■■□□ 2.213e-6■□□□□ 11
XRCC6P12956 DUS1L-207ENST00000578176 937 ntTSL 528.67■■■□□ 2.183e-6■□□□□ 11
XRCC6P12956 E4F1-208ENST00000567111 691 ntTSL 225.34■■□□□ 1.653e-6■□□□□ 11
XRCC6P12956 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC25.24■■□□□ 1.633e-6■□□□□ 11
XRCC6P12956 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.533e-6■□□□□ 11
XRCC6P12956 RUVBL2-207ENST00000595811 572 ntTSL 524.58■■□□□ 1.533e-6■□□□□ 11
XRCC6P12956 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC24.38■■□□□ 1.493e-6■□□□□ 11
XRCC6P12956 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC24.33■■□□□ 1.483e-6■□□□□ 11
XRCC6P12956 RUVBL2-209ENST00000596837 682 ntTSL 224.23■■□□□ 1.473e-6■□□□□ 11
XRCC6P12956 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.363e-6■□□□□ 11
XRCC6P12956 RXRB-204ENST00000483281 1977 ntTSL 523.48■■□□□ 1.353e-10■□□□□ 11
XRCC6P12956 CTBP2-208ENST00000476817 705 ntTSL 323.27■■□□□ 1.323e-6■□□□□ 11
XRCC6P12956 RUVBL2-204ENST00000594338 1853 ntTSL 522.93■■□□□ 1.263e-6■□□□□ 11
XRCC6P12956 RUVBL2-203ENST00000594017 959 ntTSL 222.91■■□□□ 1.263e-6■□□□□ 11
XRCC6P12956 RUVBL2-202ENST00000593570 813 ntTSL 522.68■■□□□ 1.223e-6■□□□□ 11
XRCC6P12956 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC22.45■■□□□ 1.183e-6■□□□□ 11
XRCC6P12956 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC22.35■■□□□ 1.173e-6■□□□□ 11
XRCC6P12956 RUVBL2-208ENST00000596247 1563 ntTSL 222.08■■□□□ 1.133e-6■□□□□ 11
XRCC6P12956 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC21.98■■□□□ 1.113e-10■□□□□ 11
XRCC6P12956 SLC25A37-202ENST00000417331 735 ntTSL 521.81■■□□□ 1.084e-7■□□□□ 11
XRCC6P12956 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC21.65■■□□□ 1.063e-6■□□□□ 11
XRCC6P12956 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.033e-6■□□□□ 11
XRCC6P12956 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.963e-10■□□□□ 11
XRCC6P12956 ATXN2L-210ENST00000562867 609 ntTSL 220.22■□□□□ 0.833e-6■□□□□ 11
XRCC6P12956 RUVBL2-201ENST00000221413 1478 ntTSL 1 (best)19.47■□□□□ 0.713e-6■□□□□ 11
XRCC6P12956 C16orf58-210ENST00000568491 2422 ntTSL 219.28■□□□□ 0.683e-6■□□□□ 11
XRCC6P12956 SLC25A37-205ENST00000519192 479 ntTSL 219.25■□□□□ 0.674e-7■□□□□ 11
XRCC6P12956 RXRB-203ENST00000481441 1330 ntTSL 219.14■□□□□ 0.653e-10■□□□□ 11
XRCC6P12956 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.63e-6■□□□□ 11
XRCC6P12956 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC18.82■□□□□ 0.63e-6■□□□□ 11
XRCC6P12956 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.533e-6■□□□□ 11
XRCC6P12956 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.481e-6■□□□□ 11
XRCC6P12956 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.463e-6■□□□□ 11
XRCC6P12956 SLC25A37-212ENST00000523930 823 ntTSL 517.68■□□□□ 0.424e-7■□□□□ 11
XRCC6P12956 ATXN2L-215ENST00000564304 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.383e-6■□□□□ 11
XRCC6P12956 ATXN2L-211ENST00000563314 4574 ntTSL 517.4■□□□□ 0.383e-6■□□□□ 11
XRCC6P12956 ATXN2L-225ENST00000570200 3635 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.253e-6■□□□□ 11
XRCC6P12956 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC16.48■□□□□ 0.233e-6■□□□□ 11
XRCC6P12956 ATXN2L-205ENST00000395547 3981 ntAPPRIS P4 TSL 1 (best) BASIC16.4■□□□□ 0.223e-6■□□□□ 11
XRCC6P12956 ADAR-206ENST00000494866 471 ntTSL 216.24■□□□□ 0.193e-6■□□□□ 11
XRCC6P12956 ATXN2L-201ENST00000325215 3788 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.183e-6■□□□□ 11
XRCC6P12956 ATXN2L-203ENST00000340394 3807 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.133e-6■□□□□ 11
XRCC6P12956 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC15.48■□□□□ 0.073e-6■□□□□ 11
XRCC6P12956 MOV10-204ENST00000413052 3641 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.033e-6■□□□□ 11
XRCC6P12956 MOV10-203ENST00000369645 3552 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.053e-6■□□□□ 11
Retrieved 100 of 6,788 protein–RNA pairs in 39.6 ms