Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 AL136162.1-201ENST00000607711 1078 ntBASIC21.51■■□□□ 1.03
TRIM56Q9BRZ2 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
TRIM56Q9BRZ2 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
TRIM56Q9BRZ2 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
TRIM56Q9BRZ2 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
TRIM56Q9BRZ2 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
TRIM56Q9BRZ2 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
TRIM56Q9BRZ2 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
TRIM56Q9BRZ2 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
TRIM56Q9BRZ2 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC21.5■■□□□ 1.03
TRIM56Q9BRZ2 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
TRIM56Q9BRZ2 MIR638-201ENST00000385237 100 ntBASIC21.5■■□□□ 1.03
TRIM56Q9BRZ2 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC21.5■■□□□ 1.03
TRIM56Q9BRZ2 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC21.5■■□□□ 1.03
TRIM56Q9BRZ2 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC21.5■■□□□ 1.03
TRIM56Q9BRZ2 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC21.5■■□□□ 1.03
TRIM56Q9BRZ2 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
TRIM56Q9BRZ2 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
TRIM56Q9BRZ2 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC21.5■■□□□ 1.03
TRIM56Q9BRZ2 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
TRIM56Q9BRZ2 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
TRIM56Q9BRZ2 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC21.49■■□□□ 1.03
TRIM56Q9BRZ2 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
TRIM56Q9BRZ2 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
TRIM56Q9BRZ2 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
TRIM56Q9BRZ2 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
TRIM56Q9BRZ2 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
TRIM56Q9BRZ2 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC21.49■■□□□ 1.03
TRIM56Q9BRZ2 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC21.49■■□□□ 1.03
TRIM56Q9BRZ2 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC21.49■■□□□ 1.03
TRIM56Q9BRZ2 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
TRIM56Q9BRZ2 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
TRIM56Q9BRZ2 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
TRIM56Q9BRZ2 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC21.49■■□□□ 1.03
TRIM56Q9BRZ2 PXK-203ENST00000383715 1756 ntTSL 5 BASIC21.48■■□□□ 1.03
TRIM56Q9BRZ2 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC21.48■■□□□ 1.03
TRIM56Q9BRZ2 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
TRIM56Q9BRZ2 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC21.48■■□□□ 1.03
TRIM56Q9BRZ2 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
TRIM56Q9BRZ2 AL139246.5-201ENST00000606645 996 ntBASIC21.48■■□□□ 1.03
TRIM56Q9BRZ2 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
TRIM56Q9BRZ2 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC21.48■■□□□ 1.03
TRIM56Q9BRZ2 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
TRIM56Q9BRZ2 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
TRIM56Q9BRZ2 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC21.48■■□□□ 1.03
TRIM56Q9BRZ2 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
TRIM56Q9BRZ2 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
TRIM56Q9BRZ2 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
TRIM56Q9BRZ2 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC21.47■■□□□ 1.03
TRIM56Q9BRZ2 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
TRIM56Q9BRZ2 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC21.47■■□□□ 1.03
TRIM56Q9BRZ2 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
TRIM56Q9BRZ2 BX842568.3-201ENST00000418104 571 ntBASIC21.47■■□□□ 1.03
TRIM56Q9BRZ2 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC21.47■■□□□ 1.03
TRIM56Q9BRZ2 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
TRIM56Q9BRZ2 AC133561.4-201ENST00000566112 224 ntBASIC21.47■■□□□ 1.03
TRIM56Q9BRZ2 AC104564.3-201ENST00000582367 638 ntBASIC21.47■■□□□ 1.03
TRIM56Q9BRZ2 SMUG1P1-201ENST00000590640 811 ntBASIC21.47■■□□□ 1.03
TRIM56Q9BRZ2 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
TRIM56Q9BRZ2 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
TRIM56Q9BRZ2 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC21.47■■□□□ 1.03
TRIM56Q9BRZ2 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
TRIM56Q9BRZ2 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
TRIM56Q9BRZ2 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
TRIM56Q9BRZ2 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
TRIM56Q9BRZ2 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
TRIM56Q9BRZ2 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
TRIM56Q9BRZ2 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
TRIM56Q9BRZ2 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC21.46■■□□□ 1.03
TRIM56Q9BRZ2 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
TRIM56Q9BRZ2 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
TRIM56Q9BRZ2 AC135279.3-201ENST00000610945 1311 ntBASIC21.46■■□□□ 1.03
TRIM56Q9BRZ2 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC21.45■■□□□ 1.03
TRIM56Q9BRZ2 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
TRIM56Q9BRZ2 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC21.45■■□□□ 1.02
TRIM56Q9BRZ2 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
TRIM56Q9BRZ2 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
TRIM56Q9BRZ2 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC21.45■■□□□ 1.02
TRIM56Q9BRZ2 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
TRIM56Q9BRZ2 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
TRIM56Q9BRZ2 AC096631.2-201ENST00000436136 790 ntBASIC21.45■■□□□ 1.02
TRIM56Q9BRZ2 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC21.45■■□□□ 1.02
TRIM56Q9BRZ2 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC21.45■■□□□ 1.02
TRIM56Q9BRZ2 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
TRIM56Q9BRZ2 MED17-221ENST00000639724 2317 ntTSL 5 BASIC21.45■■□□□ 1.02
TRIM56Q9BRZ2 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC21.45■■□□□ 1.02
TRIM56Q9BRZ2 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC21.45■■□□□ 1.02
TRIM56Q9BRZ2 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC21.45■■□□□ 1.02
TRIM56Q9BRZ2 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC21.45■■□□□ 1.02
TRIM56Q9BRZ2 AL157384.1-201ENST00000445995 2473 ntBASIC21.45■■□□□ 1.02
TRIM56Q9BRZ2 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC21.44■■□□□ 1.02
TRIM56Q9BRZ2 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC21.44■■□□□ 1.02
TRIM56Q9BRZ2 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC21.44■■□□□ 1.02
TRIM56Q9BRZ2 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
TRIM56Q9BRZ2 ASL-203ENST00000380839 1765 ntTSL 5 BASIC21.44■■□□□ 1.02
TRIM56Q9BRZ2 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC21.44■■□□□ 1.02
TRIM56Q9BRZ2 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
TRIM56Q9BRZ2 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC21.44■■□□□ 1.02
TRIM56Q9BRZ2 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC21.44■■□□□ 1.02
TRIM56Q9BRZ2 AC233992.3-201ENST00000607491 485 ntBASIC21.44■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 107.6 ms