Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC3.19□□□□□ -1.99e-6■■■□□ 18.6
YBX3P16989 ZNF280D-211ENST00000560002 4040 ntTSL 53.05□□□□□ -1.927e-6■■■□□ 18.6
YBX3P16989 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC33.3■■■□□ 2.924e-7■■■□□ 18.6
YBX3P16989 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC24.59■■□□□ 1.534e-7■■■□□ 18.6
YBX3P16989 MYH9-206ENST00000472210 387 ntTSL 321.54■■□□□ 1.043e-15■■■□□ 18.6
YBX3P16989 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC19.75■□□□□ 0.759e-7■■■□□ 18.6
YBX3P16989 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC22.7■■□□□ 1.221e-323■■■□□ 18.6
YBX3P16989 TWSG1-203ENST00000583147 2311 ntTSL 222.6■■□□□ 1.211e-6■■■□□ 18.6
YBX3P16989 TWSG1-201ENST00000262120 3756 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.221e-6■■■□□ 18.6
YBX3P16989 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC19.71■□□□□ 0.755e-7■■■□□ 18.6
YBX3P16989 ADSL-222ENST00000637669 1927 ntTSL 519.06■□□□□ 0.645e-7■■■□□ 18.6
YBX3P16989 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC18.78■□□□□ 0.65e-7■■■□□ 18.6
YBX3P16989 ADSL-201ENST00000216194 1620 ntTSL 2 BASIC18.41■□□□□ 0.545e-7■■■□□ 18.6
YBX3P16989 AL022238.4-201ENST00000639722 4563 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.225e-7■■■□□ 18.6
YBX3P16989 ADSL-208ENST00000623063 4359 ntAPPRIS P2 TSL 1 (best) BASIC10.78□□□□□ -0.685e-7■■■□□ 18.6
YBX3P16989 NENF-204ENST00000479589 845 ntTSL 231.44■■■□□ 2.622e-8■■■□□ 18.6
YBX3P16989 NENF-203ENST00000473900 875 ntTSL 228.33■■■□□ 2.132e-8■■■□□ 18.6
YBX3P16989 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.852e-8■■■□□ 18.6
YBX3P16989 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.161e-9■■■□□ 18.5
YBX3P16989 HECTD1-219ENST00000611816 8980 ntTSL 5 BASIC13.5□□□□□ -0.251e-9■■■□□ 18.5
YBX3P16989 HECTD1-203ENST00000553700 9080 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.351e-9■■■□□ 18.5
YBX3P16989 HECTD1-204ENST00000553957 4395 ntTSL 24.76□□□□□ -1.653e-9■■■□□ 18.5
YBX3P16989 RPL4-205ENST00000564439 582 ntTSL 313.61□□□□□ -0.232e-57■■■□□ 18.5
YBX3P16989 MACF1-216ENST00000476350 5304 ntTSL 28.69□□□□□ -1.023e-6■■■□□ 18.5
YBX3P16989 MACF1-229ENST00000530262 6257 ntTSL 57.43□□□□□ -1.223e-6■■■□□ 18.5
YBX3P16989 TMEM189-204ENST00000371658 813 ntTSL 327.21■■□□□ 1.957e-7■■■□□ 18.5
YBX3P16989 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC21.72■■□□□ 1.077e-7■■■□□ 18.5
YBX3P16989 TMEM189-205ENST00000453505 2028 ntTSL 1 (best)21.67■■□□□ 1.067e-7■■■□□ 18.5
YBX3P16989 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.356e-7■■■□□ 18.5
YBX3P16989 TMEM189-202ENST00000371652 7714 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.087e-7■■■□□ 18.5
YBX3P16989 AL132712.1-201ENST00000555967 582 ntTSL 4 BASIC10.7□□□□□ -0.73e-6■■■□□ 18.5
YBX3P16989 ATP5G1-209ENST00000514808 359 ntTSL 2 BASIC15.37■□□□□ 0.055e-15■■■□□ 18.5
YBX3P16989 ATP5G1-205ENST00000504591 401 ntTSL 214.22□□□□□ -0.135e-15■■■□□ 18.5
YBX3P16989 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC5.67□□□□□ -1.55e-7■■■□□ 18.5
YBX3P16989 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.695e-9■■■□□ 18.5
YBX3P16989 GNB1-202ENST00000434686 684 ntTSL 315.61■□□□□ 0.092e-13■■■□□ 18.5
YBX3P16989 B4GALT2-207ENST00000497866 980 ntTSL 237.53■■■■□ 3.61e-8■■■□□ 18.5
YBX3P16989 B4GALT2-206ENST00000485678 943 ntTSL 325.48■■□□□ 1.671e-8■■■□□ 18.5
YBX3P16989 PPIP5K2-202ENST00000358359 5813 ntAPPRIS ALT2 TSL 1 (best) BASIC8.87□□□□□ -0.994e-8■■■□□ 18.5
YBX3P16989 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC4.09□□□□□ -1.754e-8■■■□□ 18.5
YBX3P16989 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC4□□□□□ -1.774e-8■■■□□ 18.5
YBX3P16989 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC3.87□□□□□ -1.794e-8■■■□□ 18.5
YBX3P16989 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC3.81□□□□□ -1.84e-8■■■□□ 18.5
YBX3P16989 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC25.96■■□□□ 1.758e-7■■■□□ 18.5
YBX3P16989 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.598e-7■■■□□ 18.5
YBX3P16989 SCAMP3-204ENST00000465312 715 ntTSL 523.28■■□□□ 1.328e-7■■■□□ 18.5
YBX3P16989 SCAMP3-208ENST00000490999 1011 ntTSL 221.85■■□□□ 1.098e-7■■■□□ 18.5
YBX3P16989 SCAMP3-203ENST00000462151 819 ntTSL 516.16■□□□□ 0.188e-7■■■□□ 18.5
YBX3P16989 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC20.56■□□□□ 0.884e-10■■■□□ 18.5
YBX3P16989 DDI2-202ENST00000480945 10625 ntAPPRIS P1 TSL 2 BASIC9.38□□□□□ -0.914e-8■■■□□ 18.5
YBX3P16989 VTRNA2-1-201ENST00000602301 127 ntBASIC-0.46□□□□□ -2.481e-323■■■□□ 18.5
YBX3P16989 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC38.38■■■■□ 3.734e-7■■■□□ 18.5
YBX3P16989 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC36.62■■■■□ 3.454e-7■■■□□ 18.5
YBX3P16989 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC35.64■■■■□ 3.34e-7■■■□□ 18.5
YBX3P16989 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC33.43■■■□□ 2.944e-7■■■□□ 18.5
YBX3P16989 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC32.36■■■□□ 2.774e-7■■■□□ 18.5
YBX3P16989 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC32.29■■■□□ 2.764e-7■■■□□ 18.5
YBX3P16989 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC31.05■■■□□ 2.564e-7■■■□□ 18.5
YBX3P16989 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC29.23■■■□□ 2.274e-7■■■□□ 18.5
YBX3P16989 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC26.23■■□□□ 1.794e-7■■■□□ 18.5
YBX3P16989 CAPNS1-209ENST00000590049 592 ntAPPRIS ALT2 TSL 517.56■□□□□ 0.44e-7■■■□□ 18.5
YBX3P16989 CAPNS1-202ENST00000586851 616 ntTSL 37.91□□□□□ -1.144e-7■■■□□ 18.5
YBX3P16989 CAPNS1-210ENST00000590211 403 ntTSL 55.19□□□□□ -1.584e-7■■■□□ 18.5
YBX3P16989 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC22.66■■□□□ 1.222e-7■■■□□ 18.5
YBX3P16989 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.686e-7■■■□□ 18.5
YBX3P16989 BRPF3-203ENST00000441123 5380 ntTSL 1 (best)13.16□□□□□ -0.36e-7■■■□□ 18.5
YBX3P16989 BRPF3-201ENST00000339717 4820 ntTSL 5 BASIC12.06□□□□□ -0.486e-7■■■□□ 18.5
YBX3P16989 BRPF3-209ENST00000532330 4077 ntTSL 511.81□□□□□ -0.526e-7■■■□□ 18.5
YBX3P16989 BRPF3-206ENST00000449261 4816 ntTSL 511.7□□□□□ -0.546e-7■■■□□ 18.5
YBX3P16989 BRPF3-211ENST00000534400 4254 ntTSL 5 BASIC11.26□□□□□ -0.616e-7■■■□□ 18.5
YBX3P16989 BRPF3-212ENST00000534694 4628 ntTSL 5 BASIC8.95□□□□□ -0.986e-7■■■□□ 18.5
YBX3P16989 NME1-207ENST00000480143 964 ntTSL 2 BASIC23.54■■□□□ 1.361e-8■■■□□ 18.5
YBX3P16989 NME1-210ENST00000512768 1056 ntTSL 1 (best)21.84■■□□□ 1.091e-8■■■□□ 18.5
YBX3P16989 INSR-202ENST00000341500 8954 ntAPPRIS ALT2 TSL 1 (best) BASIC9.37□□□□□ -0.913e-7■■■□□ 18.5
YBX3P16989 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.492e-6■■■□□ 18.5
YBX3P16989 PLCB3-202ENST00000325234 3946 ntTSL 1 (best) BASIC14.63□□□□□ -0.072e-6■■■□□ 18.5
YBX3P16989 PLCB3-201ENST00000279230 4197 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.22e-6■■■□□ 18.5
YBX3P16989 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.92e-6■■■□□ 18.5
YBX3P16989 BUD31-203ENST00000427499 889 ntTSL 319.55■□□□□ 0.727e-9■■■□□ 18.5
YBX3P16989 ITGB1BP1-212ENST00000470507 384 ntTSL 36.82□□□□□ -1.325e-7■■■□□ 18.5
YBX3P16989 TEX261-202ENST00000433258 758 ntTSL 224.36■■□□□ 1.496e-7■■■□□ 18.4
YBX3P16989 TEX261-203ENST00000466731 585 ntTSL 1 (best)24.26■■□□□ 1.476e-7■■■□□ 18.4
YBX3P16989 INS-IGF2-201ENST00000356578 1706 ntTSL 521.74■■□□□ 1.071e-323■■■□□ 18.4
YBX3P16989 TMEM147-208ENST00000596232 562 ntTSL 226.67■■□□□ 1.866e-10■■■□□ 18.4
YBX3P16989 TMEM147-206ENST00000595180 546 ntTSL 225.22■■□□□ 1.636e-10■■■□□ 18.4
YBX3P16989 MPST-208ENST00000628507 698 ntTSL 5 BASIC28.89■■■□□ 2.227e-7■■■□□ 18.4
YBX3P16989 IGF2-201ENST00000381389 1023 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.441e-323■■■□□ 18.4
YBX3P16989 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC25.23■■□□□ 1.631e-9■■■□□ 18.4
YBX3P16989 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.81e-9■■■□□ 18.4
YBX3P16989 TAPBP-241ENST00000489157 1299 ntTSL 1 (best) BASIC19.26■□□□□ 0.671e-9■■■□□ 18.4
YBX3P16989 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC17.63■□□□□ 0.411e-9■■■□□ 18.4
YBX3P16989 TAPBP-237ENST00000467025 751 ntTSL 317.15■□□□□ 0.341e-9■■■□□ 18.4
YBX3P16989 UBR3-206ENST00000444475 3821 ntTSL 54.36□□□□□ -1.711e-6■■■□□ 18.4
YBX3P16989 UBR3-208ENST00000474426 4066 ntTSL 1 (best)3.58□□□□□ -1.841e-6■■■□□ 18.4
YBX3P16989 IMPACT-204ENST00000580706 2948 ntTSL 1 (best)16.67■□□□□ 0.262e-8■■■□□ 18.4
YBX3P16989 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.042e-8■■■□□ 18.4
YBX3P16989 IMPACT-203ENST00000580035 520 ntTSL 38.55□□□□□ -1.042e-8■■■□□ 18.4
YBX3P16989 IMPACT-205ENST00000581278 598 ntTSL 25.49□□□□□ -1.532e-8■■■□□ 18.4
YBX3P16989 ROCK1-201ENST00000399799 9484 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.161e-7■■■□□ 18.4
YBX3P16989 ROCK1-207ENST00000635540 5656 ntTSL 57.47□□□□□ -1.211e-7■■■□□ 18.4
Retrieved 100 of 29,075 protein–RNA pairs in 370.7 ms