RNA–Protein interactions for RNA: ENST00000474426.1

UBR3-208, Transcript of ubiquitin protein ligase E3 component n-recognin 3, humanhuman

TSL 1 (best)

Gene UBR3, Length 4,066 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR3-208ENST00000474426 SLC24A1O60721 1099 aa7.03□□□□□ -1.28
UBR3-208ENST00000474426 PRKCSHP14314 528 aaPredicted RBP6.52□□□□□ -1.37
UBR3-208ENST00000474426 MYT1Q01538 1121 aa6.51□□□□□ -1.37
UBR3-208ENST00000474426 DAXXQ9UER7 740 aaPredicted RBP6.5□□□□□ -1.37
UBR3-208ENST00000474426 TTBK1Q5TCY1 1321 aaPredicted RBP6.47□□□□□ -1.37
UBR3-208ENST00000474426 APLP2Q06481 763 aa6.47□□□□□ -1.37
UBR3-208ENST00000474426 PELP1Q8IZL8 1130 aaKnown RBP6.46□□□□□ -1.37
UBR3-208ENST00000474426 ERICH6Q7L0X2 663 aa6.29□□□□□ -1.4
UBR3-208ENST00000474426 PLPPR3Q6T4P5 718 aa6.26□□□□□ -1.41
UBR3-208ENST00000474426 NCBP3Q53F19 620 aaKnown RBP6.24□□□□□ -1.41
UBR3-208ENST00000474426 EHMT2Q96KQ7 1210 aa6.2□□□□□ -1.42
UBR3-208ENST00000474426 RTN4Q9NQC3 1192 aaKnown RBP6.2□□□□□ -1.42
UBR3-208ENST00000474426 ARXQ96QS3 562 aa6.03□□□□□ -1.44
UBR3-208ENST00000474426 TIMELESSQ9UNS1 1208 aa6.03□□□□□ -1.44
UBR3-208ENST00000474426 EIF5BO60841 1220 aaKnown RBP6.01□□□□□ -1.45
UBR3-208ENST00000474426 KLHL34Q8N239 644 aa5.94□□□□□ -1.46
UBR3-208ENST00000474426 PLEKHG5O94827 1062 aa5.93□□□□□ -1.46
UBR3-208ENST00000474426 AMER1Q5JTC6 1135 aaPredicted RBP5.93□□□□□ -1.46
UBR3-208ENST00000474426 BCL11AQ9H165 835 aa5.92□□□□□ -1.46
UBR3-208ENST00000474426 CHIC1Q5VXU3 224 aa5.9□□□□□ -1.46
UBR3-208ENST00000474426 KCNA4P22459 653 aa5.88□□□□□ -1.47
UBR3-208ENST00000474426 TULP1O00294 542 aaPredicted RBP5.86□□□□□ -1.47
UBR3-208ENST00000474426 FAM9AQ8IZU1 332 aaPredicted RBP5.84□□□□□ -1.47
UBR3-208ENST00000474426 RANGAP1P46060 587 aaPredicted RBP5.83□□□□□ -1.48
UBR3-208ENST00000474426 HOMEZQ8IX15 550 aa5.79□□□□□ -1.48
UBR3-208ENST00000474426 TAOK2Q9UL54 1235 aa5.79□□□□□ -1.48
UBR3-208ENST00000474426 CSRNP3Q8WYN3 585 aa5.77□□□□□ -1.49
UBR3-208ENST00000474426 PODXL2Q9NZ53 605 aa5.75□□□□□ -1.49
UBR3-208ENST00000474426 AEBP2Q6ZN18 517 aaPredicted RBP5.75□□□□□ -1.49
UBR3-208ENST00000474426 TPRNQ4KMQ1 711 aa5.66□□□□□ -1.5
UBR3-208ENST00000474426 NPM2Q86SE8 214 aaKnown RBP5.63□□□□□ -1.51
UBR3-208ENST00000474426 UBE2Q2Q8WVN8 375 aa5.62□□□□□ -1.51
UBR3-208ENST00000474426 GTF3C3Q9Y5Q9 886 aa5.62□□□□□ -1.51
UBR3-208ENST00000474426 BCANQ96GW7 911 aa5.61□□□□□ -1.51
UBR3-208ENST00000474426 LOC105371045A0A1W2PR82 267 aa5.6□□□□□ -1.51
UBR3-208ENST00000474426 PDIA4P13667 645 aaKnown RBP5.59□□□□□ -1.51
UBR3-208ENST00000474426 HRCP23327 699 aa5.58□□□□□ -1.52
UBR3-208ENST00000474426 C14orf37Q86TY3 774 aa5.56□□□□□ -1.52
UBR3-208ENST00000474426 TRIM26Q12899 539 aaPredicted RBP5.52□□□□□ -1.53
UBR3-208ENST00000474426 PLCB2Q00722 1185 aa5.51□□□□□ -1.53
UBR3-208ENST00000474426 TMEM132AQ24JP5 1023 aa5.51□□□□□ -1.53
UBR3-208ENST00000474426 CHMP4AQ9BY43 222 aa5.5□□□□□ -1.53
UBR3-208ENST00000474426 FBXO3Q9UK99 471 aa5.49□□□□□ -1.53
UBR3-208ENST00000474426 PDE4CQ08493 712 aa5.49□□□□□ -1.53
UBR3-208ENST00000474426 SAMD1Q6SPF0 538 aaPredicted RBP5.48□□□□□ -1.53
UBR3-208ENST00000474426 SCAF1Q9H7N4 1312 aaKnown RBP5.47□□□□□ -1.53
UBR3-208ENST00000474426 PKNOX2Q96KN3 472 aa5.47□□□□□ -1.53
UBR3-208ENST00000474426 DHX37Q8IY37 1157 aaKnown RBP5.45□□□□□ -1.54
UBR3-208ENST00000474426 HAP1P54257 671 aaPredicted RBP5.45□□□□□ -1.54
UBR3-208ENST00000474426 ANO8Q9HCE9 1232 aaPredicted RBP5.43□□□□□ -1.54
UBR3-208ENST00000474426 PHF23Q9BUL5 403 aaPredicted RBP5.42□□□□□ -1.54
UBR3-208ENST00000474426 PPP6R1Q9UPN7 881 aa5.42□□□□□ -1.54
UBR3-208ENST00000474426 UBTFP17480 764 aaKnown RBP5.42□□□□□ -1.54
UBR3-208ENST00000474426 BCL11BQ9C0K0 894 aaPredicted RBP5.4□□□□□ -1.54
UBR3-208ENST00000474426 TAF7LQ5H9L4 462 aa5.4□□□□□ -1.54
UBR3-208ENST00000474426 CNKSR2Q8WXI2 1034 aa5.4□□□□□ -1.54
UBR3-208ENST00000474426 NEFLP07196 543 aa5.39□□□□□ -1.55
UBR3-208ENST00000474426 FGD1P98174 961 aa5.38□□□□□ -1.55
UBR3-208ENST00000474426 BRD2P25440 801 aaKnown RBP5.38□□□□□ -1.55
UBR3-208ENST00000474426 SUPT5HO00267 1087 aaKnown RBP5.38□□□□□ -1.55
UBR3-208ENST00000474426 CENPBP07199 599 aaPredicted RBP5.37□□□□□ -1.55
UBR3-208ENST00000474426 IGSF3O75054 1194 aa5.35□□□□□ -1.55
UBR3-208ENST00000474426 KDM2AQ9Y2K7 1162 aa5.33□□□□□ -1.56
UBR3-208ENST00000474426 DCAF8L2P0C7V8 631 aa5.32□□□□□ -1.56
UBR3-208ENST00000474426 CDK11BP21127 795 aaKnown RBP5.31□□□□□ -1.56
UBR3-208ENST00000474426 CDK11AQ9UQ88 783 aaPredicted RBP5.31□□□□□ -1.56
UBR3-208ENST00000474426 DHX30Q7L2E3 1194 aaKnown RBP eCLIP5.29□□□□□ -1.56
UBR3-208ENST00000474426 ANP32EQ9BTT0 268 aa5.28□□□□□ -1.56
UBR3-208ENST00000474426 SLC4A1APQ9BWU0 796 aaKnown RBP5.28□□□□□ -1.56
UBR3-208ENST00000474426 RSPH4AQ5TD94 716 aa5.27□□□□□ -1.57
UBR3-208ENST00000474426 VSIG10Q8N0Z9 540 aa5.27□□□□□ -1.57
UBR3-208ENST00000474426 FBLN2P98095 1184 aa5.26□□□□□ -1.57
UBR3-208ENST00000474426 CCDC136Q96JN2 1154 aa5.26□□□□□ -1.57
UBR3-208ENST00000474426 AAMPQ13685 434 aa5.25□□□□□ -1.57
UBR3-208ENST00000474426 SHROOM4Q9ULL8 1493 aa5.24□□□□□ -1.57
UBR3-208ENST00000474426 ZBTB22O15209 634 aa5.23□□□□□ -1.57
UBR3-208ENST00000474426 HSP90B1P14625 803 aaKnown RBP5.23□□□□□ -1.57
UBR3-208ENST00000474426 RSPH6AQ9H0K4 717 aa5.23□□□□□ -1.57
UBR3-208ENST00000474426 PAXIP1Q6ZW49 1069 aaPredicted RBP5.23□□□□□ -1.57
UBR3-208ENST00000474426 CFAP44Q96MT7 982 aa5.22□□□□□ -1.57
UBR3-208ENST00000474426 IRX6P78412 446 aaPredicted RBP5.21□□□□□ -1.57
UBR3-208ENST00000474426 SALL2Q9Y467 1007 aaPredicted RBP5.21□□□□□ -1.58
UBR3-208ENST00000474426 BCCIPQ9P287 314 aaKnown RBP eCLIP5.19□□□□□ -1.58
UBR3-208ENST00000474426 A0A0U1RQG5 324 aaPredicted RBP5.19□□□□□ -1.58
UBR3-208ENST00000474426 POTEDQ86YR6 584 aa5.18□□□□□ -1.58
UBR3-208ENST00000474426 ZEB1P37275 1124 aaPredicted RBP5.17□□□□□ -1.58
UBR3-208ENST00000474426 PUS7Q96PZ0 661 aaKnown RBP5.17□□□□□ -1.58
UBR3-208ENST00000474426 RBM10P98175 930 aaKnown RBP5.15□□□□□ -1.58
UBR3-208ENST00000474426 BRPF3Q9ULD4 1205 aa5.15□□□□□ -1.58
UBR3-208ENST00000474426 TRHP20396 242 aaPredicted RBP5.13□□□□□ -1.59
UBR3-208ENST00000474426 NAP1L5Q96NT1 182 aaPredicted RBP5.13□□□□□ -1.59
UBR3-208ENST00000474426 HMGB1P09429 215 aaKnown RBP5.12□□□□□ -1.59
UBR3-208ENST00000474426 NECTIN2Q92692 538 aa5.12□□□□□ -1.59
UBR3-208ENST00000474426 POLR3GLQ9BT43 218 aa5.12□□□□□ -1.59
UBR3-208ENST00000474426 ZNF326Q5BKZ1 582 aaKnown RBP5.11□□□□□ -1.59
UBR3-208ENST00000474426 CCDC9Q9Y3X0 531 aaKnown RBP5.11□□□□□ -1.59
UBR3-208ENST00000474426 TMED8Q6PL24 325 aaPredicted RBP5.11□□□□□ -1.59
UBR3-208ENST00000474426 ZFP91Q96JP5 570 aaPredicted RBP5.1□□□□□ -1.59
UBR3-208ENST00000474426 SENP3Q9H4L4 574 aaPredicted RBP5.09□□□□□ -1.59
UBR3-208ENST00000474426 ERICH6BQ5W0A0 696 aa5.09□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 138.5 ms