Protein–RNA interactions for Protein: A0A087WT01

TRAV27, T-cell receptor alpha variable 27 (Fragment), humanhuman

Predictions only

Length 109 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV27A0A087WT01 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRAV27A0A087WT01 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRAV27A0A087WT01 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRAV27A0A087WT01 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
TRAV27A0A087WT01 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRAV27A0A087WT01 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRAV27A0A087WT01 BX842568.3-201ENST00000418104 571 ntBASIC19.2■□□□□ 0.66
TRAV27A0A087WT01 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
TRAV27A0A087WT01 AC024257.2-201ENST00000549699 147 ntBASIC19.2■□□□□ 0.66
TRAV27A0A087WT01 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRAV27A0A087WT01 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRAV27A0A087WT01 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
TRAV27A0A087WT01 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRAV27A0A087WT01 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
TRAV27A0A087WT01 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRAV27A0A087WT01 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRAV27A0A087WT01 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC19.19■□□□□ 0.66
TRAV27A0A087WT01 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRAV27A0A087WT01 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
TRAV27A0A087WT01 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
TRAV27A0A087WT01 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRAV27A0A087WT01 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
TRAV27A0A087WT01 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRAV27A0A087WT01 AL136162.1-201ENST00000607711 1078 ntBASIC19.19■□□□□ 0.66
TRAV27A0A087WT01 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC19.19■□□□□ 0.66
TRAV27A0A087WT01 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRAV27A0A087WT01 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
TRAV27A0A087WT01 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRAV27A0A087WT01 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRAV27A0A087WT01 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRAV27A0A087WT01 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
TRAV27A0A087WT01 AP006587.3-201ENST00000525742 1516 ntBASIC19.19■□□□□ 0.66
TRAV27A0A087WT01 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC19.19■□□□□ 0.66
TRAV27A0A087WT01 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRAV27A0A087WT01 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRAV27A0A087WT01 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TRAV27A0A087WT01 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TRAV27A0A087WT01 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
TRAV27A0A087WT01 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
TRAV27A0A087WT01 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRAV27A0A087WT01 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC19.18■□□□□ 0.66
TRAV27A0A087WT01 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC19.18■□□□□ 0.66
TRAV27A0A087WT01 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC19.18■□□□□ 0.66
TRAV27A0A087WT01 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
TRAV27A0A087WT01 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC19.18■□□□□ 0.66
TRAV27A0A087WT01 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC19.18■□□□□ 0.66
TRAV27A0A087WT01 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRAV27A0A087WT01 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC19.18■□□□□ 0.66
TRAV27A0A087WT01 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
TRAV27A0A087WT01 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRAV27A0A087WT01 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRAV27A0A087WT01 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRAV27A0A087WT01 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TRAV27A0A087WT01 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TRAV27A0A087WT01 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRAV27A0A087WT01 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
TRAV27A0A087WT01 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TRAV27A0A087WT01 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC19.17■□□□□ 0.66
TRAV27A0A087WT01 SMUG1P1-201ENST00000590640 811 ntBASIC19.17■□□□□ 0.66
TRAV27A0A087WT01 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC19.17■□□□□ 0.66
TRAV27A0A087WT01 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC19.17■□□□□ 0.66
TRAV27A0A087WT01 AC233992.3-201ENST00000607491 485 ntBASIC19.17■□□□□ 0.66
TRAV27A0A087WT01 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRAV27A0A087WT01 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRAV27A0A087WT01 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TRAV27A0A087WT01 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
TRAV27A0A087WT01 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRAV27A0A087WT01 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRAV27A0A087WT01 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC19.16■□□□□ 0.66
TRAV27A0A087WT01 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC19.16■□□□□ 0.66
TRAV27A0A087WT01 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRAV27A0A087WT01 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
TRAV27A0A087WT01 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRAV27A0A087WT01 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
TRAV27A0A087WT01 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRAV27A0A087WT01 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC19.16■□□□□ 0.66
TRAV27A0A087WT01 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRAV27A0A087WT01 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC19.16■□□□□ 0.66
TRAV27A0A087WT01 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC19.16■□□□□ 0.66
TRAV27A0A087WT01 AC126544.1-201ENST00000580842 1059 ntBASIC19.16■□□□□ 0.66
TRAV27A0A087WT01 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC19.16■□□□□ 0.66
TRAV27A0A087WT01 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
TRAV27A0A087WT01 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRAV27A0A087WT01 AC135279.3-201ENST00000610945 1311 ntBASIC19.16■□□□□ 0.66
TRAV27A0A087WT01 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
TRAV27A0A087WT01 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
TRAV27A0A087WT01 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRAV27A0A087WT01 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
TRAV27A0A087WT01 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
TRAV27A0A087WT01 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC19.15■□□□□ 0.66
TRAV27A0A087WT01 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRAV27A0A087WT01 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
TRAV27A0A087WT01 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRAV27A0A087WT01 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC19.15■□□□□ 0.66
TRAV27A0A087WT01 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC19.15■□□□□ 0.66
TRAV27A0A087WT01 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC19.15■□□□□ 0.66
TRAV27A0A087WT01 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC19.15■□□□□ 0.66
TRAV27A0A087WT01 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
TRAV27A0A087WT01 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
TRAV27A0A087WT01 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms