Protein–RNA interactions for Protein: A0A0B4J244

TRAV3, T-cell receptor alpha variable 3 (gene/pseudogene) (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV3A0A0B4J244 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
TRAV3A0A0B4J244 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
TRAV3A0A0B4J244 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRAV3A0A0B4J244 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC17.11■□□□□ 0.33
TRAV3A0A0B4J244 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRAV3A0A0B4J244 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRAV3A0A0B4J244 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
TRAV3A0A0B4J244 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
TRAV3A0A0B4J244 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRAV3A0A0B4J244 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TRAV3A0A0B4J244 AP005435.1-201ENST00000529293 1178 ntBASIC17.11■□□□□ 0.33
TRAV3A0A0B4J244 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC17.11■□□□□ 0.33
TRAV3A0A0B4J244 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC17.11■□□□□ 0.33
TRAV3A0A0B4J244 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC17.11■□□□□ 0.33
TRAV3A0A0B4J244 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRAV3A0A0B4J244 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRAV3A0A0B4J244 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRAV3A0A0B4J244 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRAV3A0A0B4J244 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC17.11■□□□□ 0.33
TRAV3A0A0B4J244 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRAV3A0A0B4J244 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC17.11■□□□□ 0.33
TRAV3A0A0B4J244 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TRAV3A0A0B4J244 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC17.1■□□□□ 0.33
TRAV3A0A0B4J244 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRAV3A0A0B4J244 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRAV3A0A0B4J244 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRAV3A0A0B4J244 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRAV3A0A0B4J244 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TRAV3A0A0B4J244 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRAV3A0A0B4J244 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC17.1■□□□□ 0.33
TRAV3A0A0B4J244 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC17.1■□□□□ 0.33
TRAV3A0A0B4J244 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRAV3A0A0B4J244 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC17.1■□□□□ 0.33
TRAV3A0A0B4J244 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC17.1■□□□□ 0.33
TRAV3A0A0B4J244 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRAV3A0A0B4J244 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRAV3A0A0B4J244 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRAV3A0A0B4J244 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRAV3A0A0B4J244 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
TRAV3A0A0B4J244 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRAV3A0A0B4J244 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRAV3A0A0B4J244 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRAV3A0A0B4J244 SNX3-202ENST00000349379 890 ntTSL 2 BASIC17.09■□□□□ 0.33
TRAV3A0A0B4J244 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TRAV3A0A0B4J244 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC17.09■□□□□ 0.33
TRAV3A0A0B4J244 SF1-220ENST00000626028 704 ntTSL 2 BASIC17.09■□□□□ 0.33
TRAV3A0A0B4J244 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRAV3A0A0B4J244 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRAV3A0A0B4J244 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TRAV3A0A0B4J244 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC17.09■□□□□ 0.33
TRAV3A0A0B4J244 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRAV3A0A0B4J244 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TRAV3A0A0B4J244 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC17.09■□□□□ 0.33
TRAV3A0A0B4J244 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
TRAV3A0A0B4J244 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
TRAV3A0A0B4J244 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC17.08■□□□□ 0.33
TRAV3A0A0B4J244 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
TRAV3A0A0B4J244 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC17.08■□□□□ 0.32
TRAV3A0A0B4J244 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
TRAV3A0A0B4J244 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC17.08■□□□□ 0.32
TRAV3A0A0B4J244 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
TRAV3A0A0B4J244 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
TRAV3A0A0B4J244 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRAV3A0A0B4J244 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRAV3A0A0B4J244 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
TRAV3A0A0B4J244 AL157384.1-201ENST00000445995 2473 ntBASIC17.07■□□□□ 0.32
TRAV3A0A0B4J244 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
TRAV3A0A0B4J244 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRAV3A0A0B4J244 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRAV3A0A0B4J244 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC17.07■□□□□ 0.32
TRAV3A0A0B4J244 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRAV3A0A0B4J244 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRAV3A0A0B4J244 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRAV3A0A0B4J244 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRAV3A0A0B4J244 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRAV3A0A0B4J244 PTMA-205ENST00000410064 814 ntTSL 2 BASIC17.07■□□□□ 0.32
TRAV3A0A0B4J244 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRAV3A0A0B4J244 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC17.07■□□□□ 0.32
TRAV3A0A0B4J244 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC17.07■□□□□ 0.32
TRAV3A0A0B4J244 AL034346.1-201ENST00000568244 1277 ntBASIC17.07■□□□□ 0.32
TRAV3A0A0B4J244 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC17.07■□□□□ 0.32
TRAV3A0A0B4J244 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC17.07■□□□□ 0.32
TRAV3A0A0B4J244 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRAV3A0A0B4J244 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRAV3A0A0B4J244 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
TRAV3A0A0B4J244 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRAV3A0A0B4J244 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
TRAV3A0A0B4J244 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRAV3A0A0B4J244 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRAV3A0A0B4J244 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRAV3A0A0B4J244 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC17.06■□□□□ 0.32
TRAV3A0A0B4J244 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRAV3A0A0B4J244 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC17.06■□□□□ 0.32
TRAV3A0A0B4J244 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
TRAV3A0A0B4J244 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
TRAV3A0A0B4J244 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRAV3A0A0B4J244 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC17.06■□□□□ 0.32
TRAV3A0A0B4J244 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRAV3A0A0B4J244 AL136116.3-201ENST00000402907 1138 ntBASIC17.06■□□□□ 0.32
TRAV3A0A0B4J244 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC17.06■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms