Protein–RNA interactions for Protein: P55289

CDH12, Cadherin-12, humanhuman

Predictions only

Length 794 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH12P55289 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
CDH12P55289 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
CDH12P55289 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CDH12P55289 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
CDH12P55289 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
CDH12P55289 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC19.83■□□□□ 0.77
CDH12P55289 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
CDH12P55289 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
CDH12P55289 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC19.83■□□□□ 0.77
CDH12P55289 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC19.83■□□□□ 0.77
CDH12P55289 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.76
CDH12P55289 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CDH12P55289 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC19.83■□□□□ 0.76
CDH12P55289 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CDH12P55289 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
CDH12P55289 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
CDH12P55289 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
CDH12P55289 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
CDH12P55289 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.76
CDH12P55289 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
CDH12P55289 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
CDH12P55289 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC19.82■□□□□ 0.76
CDH12P55289 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CDH12P55289 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
CDH12P55289 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CDH12P55289 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CDH12P55289 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
CDH12P55289 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CDH12P55289 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CDH12P55289 RPP21-222ENST00000433076 577 ntTSL 2 BASIC19.82■□□□□ 0.76
CDH12P55289 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC19.82■□□□□ 0.76
CDH12P55289 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
CDH12P55289 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC19.82■□□□□ 0.76
CDH12P55289 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC19.82■□□□□ 0.76
CDH12P55289 AC079089.2-201ENST00000531211 1277 ntBASIC19.82■□□□□ 0.76
CDH12P55289 AC092171.4-201ENST00000609130 632 ntBASIC19.82■□□□□ 0.76
CDH12P55289 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC19.82■□□□□ 0.76
CDH12P55289 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC19.82■□□□□ 0.76
CDH12P55289 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
CDH12P55289 USP45-205ENST00000472914 1617 ntTSL 5 BASIC19.82■□□□□ 0.76
CDH12P55289 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC19.82■□□□□ 0.76
CDH12P55289 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CDH12P55289 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CDH12P55289 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
CDH12P55289 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
CDH12P55289 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CDH12P55289 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
CDH12P55289 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
CDH12P55289 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CDH12P55289 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
CDH12P55289 TRIR-202ENST00000588213 841 ntTSL 3 BASIC19.81■□□□□ 0.76
CDH12P55289 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
CDH12P55289 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
CDH12P55289 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC19.81■□□□□ 0.76
CDH12P55289 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
CDH12P55289 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC19.81■□□□□ 0.76
CDH12P55289 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC19.81■□□□□ 0.76
CDH12P55289 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
CDH12P55289 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CDH12P55289 EI24-211ENST00000534546 1544 ntTSL 2 BASIC19.81■□□□□ 0.76
CDH12P55289 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CDH12P55289 AC073130.3-201ENST00000624389 2278 ntBASIC19.81■□□□□ 0.76
CDH12P55289 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CDH12P55289 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CDH12P55289 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
CDH12P55289 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CDH12P55289 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
CDH12P55289 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
CDH12P55289 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CDH12P55289 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC19.8■□□□□ 0.76
CDH12P55289 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CDH12P55289 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CDH12P55289 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CDH12P55289 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CDH12P55289 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
CDH12P55289 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
CDH12P55289 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
CDH12P55289 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC19.8■□□□□ 0.76
CDH12P55289 MIR4466-201ENST00000606121 54 ntBASIC19.8■□□□□ 0.76
CDH12P55289 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC19.8■□□□□ 0.76
CDH12P55289 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC19.79■□□□□ 0.76
CDH12P55289 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CDH12P55289 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CDH12P55289 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CDH12P55289 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CDH12P55289 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC19.79■□□□□ 0.76
CDH12P55289 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC19.79■□□□□ 0.76
CDH12P55289 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CDH12P55289 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CDH12P55289 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CDH12P55289 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC19.79■□□□□ 0.76
CDH12P55289 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC19.79■□□□□ 0.76
CDH12P55289 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
CDH12P55289 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
CDH12P55289 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC19.79■□□□□ 0.76
CDH12P55289 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CDH12P55289 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CDH12P55289 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
CDH12P55289 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CDH12P55289 OR7E47P-201ENST00000546390 1422 ntBASIC19.78■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 57.5 ms