Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CHMP1AQ9HD42 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
CHMP1AQ9HD42 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CHMP1AQ9HD42 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CHMP1AQ9HD42 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
CHMP1AQ9HD42 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
CHMP1AQ9HD42 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CHMP1AQ9HD42 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CHMP1AQ9HD42 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CHMP1AQ9HD42 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC18.31■□□□□ 0.52
CHMP1AQ9HD42 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC18.31■□□□□ 0.52
CHMP1AQ9HD42 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CHMP1AQ9HD42 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CHMP1AQ9HD42 FAM99A-202ENST00000538190 1989 ntBASIC18.31■□□□□ 0.52
CHMP1AQ9HD42 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CHMP1AQ9HD42 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CHMP1AQ9HD42 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC18.31■□□□□ 0.52
CHMP1AQ9HD42 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CHMP1AQ9HD42 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
CHMP1AQ9HD42 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CHMP1AQ9HD42 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
CHMP1AQ9HD42 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC18.3■□□□□ 0.52
CHMP1AQ9HD42 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CHMP1AQ9HD42 C17orf82-201ENST00000623772 1530 ntBASIC18.3■□□□□ 0.52
CHMP1AQ9HD42 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CHMP1AQ9HD42 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
CHMP1AQ9HD42 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CHMP1AQ9HD42 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC18.3■□□□□ 0.52
CHMP1AQ9HD42 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC18.3■□□□□ 0.52
CHMP1AQ9HD42 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CHMP1AQ9HD42 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CHMP1AQ9HD42 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CHMP1AQ9HD42 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC18.3■□□□□ 0.52
CHMP1AQ9HD42 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CHMP1AQ9HD42 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CHMP1AQ9HD42 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CHMP1AQ9HD42 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CHMP1AQ9HD42 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CHMP1AQ9HD42 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CHMP1AQ9HD42 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CHMP1AQ9HD42 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CHMP1AQ9HD42 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CHMP1AQ9HD42 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CHMP1AQ9HD42 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CHMP1AQ9HD42 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
CHMP1AQ9HD42 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CHMP1AQ9HD42 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CHMP1AQ9HD42 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CHMP1AQ9HD42 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CHMP1AQ9HD42 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CHMP1AQ9HD42 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
CHMP1AQ9HD42 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CHMP1AQ9HD42 RARRES2P1-201ENST00000474487 481 ntBASIC18.29■□□□□ 0.52
CHMP1AQ9HD42 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CHMP1AQ9HD42 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
CHMP1AQ9HD42 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CHMP1AQ9HD42 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CHMP1AQ9HD42 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
CHMP1AQ9HD42 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
CHMP1AQ9HD42 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CHMP1AQ9HD42 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
CHMP1AQ9HD42 STX6-204ENST00000542060 4809 ntTSL 2 BASIC18.29■□□□□ 0.52
CHMP1AQ9HD42 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CHMP1AQ9HD42 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CHMP1AQ9HD42 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC18.28■□□□□ 0.52
CHMP1AQ9HD42 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CHMP1AQ9HD42 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CHMP1AQ9HD42 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC18.28■□□□□ 0.52
CHMP1AQ9HD42 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC18.28■□□□□ 0.52
CHMP1AQ9HD42 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC18.28■□□□□ 0.52
CHMP1AQ9HD42 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CHMP1AQ9HD42 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CHMP1AQ9HD42 VGF-203ENST00000611537 1622 ntTSL 5 BASIC18.28■□□□□ 0.52
CHMP1AQ9HD42 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CHMP1AQ9HD42 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
CHMP1AQ9HD42 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC18.28■□□□□ 0.52
CHMP1AQ9HD42 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CHMP1AQ9HD42 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC18.28■□□□□ 0.52
CHMP1AQ9HD42 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CHMP1AQ9HD42 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CHMP1AQ9HD42 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CHMP1AQ9HD42 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC18.28■□□□□ 0.52
CHMP1AQ9HD42 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
CHMP1AQ9HD42 AC092667.1-201ENST00000434301 2586 ntBASIC18.28■□□□□ 0.52
CHMP1AQ9HD42 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
CHMP1AQ9HD42 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
CHMP1AQ9HD42 AC005229.4-201ENST00000610085 2198 ntBASIC18.27■□□□□ 0.52
CHMP1AQ9HD42 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC18.27■□□□□ 0.52
CHMP1AQ9HD42 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC18.27■□□□□ 0.52
CHMP1AQ9HD42 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC18.27■□□□□ 0.52
CHMP1AQ9HD42 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC18.27■□□□□ 0.52
CHMP1AQ9HD42 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC18.27■□□□□ 0.52
CHMP1AQ9HD42 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CHMP1AQ9HD42 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.51
CHMP1AQ9HD42 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC18.27■□□□□ 0.51
CHMP1AQ9HD42 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
CHMP1AQ9HD42 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CHMP1AQ9HD42 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
CHMP1AQ9HD42 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CHMP1AQ9HD42 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 18.2 ms