Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TRIM39Q9HCM9 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TRIM39Q9HCM9 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
TRIM39Q9HCM9 AL162430.1-201ENST00000480705 870 ntBASIC21.2■□□□□ 0.98
TRIM39Q9HCM9 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC21.2■□□□□ 0.98
TRIM39Q9HCM9 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC21.2■□□□□ 0.98
TRIM39Q9HCM9 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TRIM39Q9HCM9 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC21.2■□□□□ 0.98
TRIM39Q9HCM9 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
TRIM39Q9HCM9 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
TRIM39Q9HCM9 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TRIM39Q9HCM9 AC242852.2-201ENST00000615738 1807 ntBASIC21.2■□□□□ 0.98
TRIM39Q9HCM9 AC092053.2-201ENST00000640557 1818 ntBASIC21.2■□□□□ 0.98
TRIM39Q9HCM9 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
TRIM39Q9HCM9 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC21.19■□□□□ 0.98
TRIM39Q9HCM9 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
TRIM39Q9HCM9 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
TRIM39Q9HCM9 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
TRIM39Q9HCM9 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
TRIM39Q9HCM9 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
TRIM39Q9HCM9 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC21.19■□□□□ 0.98
TRIM39Q9HCM9 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
TRIM39Q9HCM9 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
TRIM39Q9HCM9 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC21.19■□□□□ 0.98
TRIM39Q9HCM9 AC055733.4-201ENST00000638462 1354 ntBASIC21.19■□□□□ 0.98
TRIM39Q9HCM9 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
TRIM39Q9HCM9 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC21.19■□□□□ 0.98
TRIM39Q9HCM9 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC21.19■□□□□ 0.98
TRIM39Q9HCM9 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
TRIM39Q9HCM9 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
TRIM39Q9HCM9 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
TRIM39Q9HCM9 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TRIM39Q9HCM9 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TRIM39Q9HCM9 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC21.18■□□□□ 0.98
TRIM39Q9HCM9 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
TRIM39Q9HCM9 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
TRIM39Q9HCM9 GUSBP5-202ENST00000510805 1989 ntBASIC21.18■□□□□ 0.98
TRIM39Q9HCM9 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
TRIM39Q9HCM9 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
TRIM39Q9HCM9 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TRIM39Q9HCM9 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC21.18■□□□□ 0.98
TRIM39Q9HCM9 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC21.18■□□□□ 0.98
TRIM39Q9HCM9 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TRIM39Q9HCM9 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
TRIM39Q9HCM9 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
TRIM39Q9HCM9 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TRIM39Q9HCM9 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC21.18■□□□□ 0.98
TRIM39Q9HCM9 AC079834.2-201ENST00000609776 1949 ntBASIC21.17■□□□□ 0.98
TRIM39Q9HCM9 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC21.17■□□□□ 0.98
TRIM39Q9HCM9 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
TRIM39Q9HCM9 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
TRIM39Q9HCM9 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC21.17■□□□□ 0.98
TRIM39Q9HCM9 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
TRIM39Q9HCM9 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
TRIM39Q9HCM9 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC21.17■□□□□ 0.98
TRIM39Q9HCM9 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
TRIM39Q9HCM9 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC21.17■□□□□ 0.98
TRIM39Q9HCM9 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC21.17■□□□□ 0.98
TRIM39Q9HCM9 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
TRIM39Q9HCM9 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC21.17■□□□□ 0.98
TRIM39Q9HCM9 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
TRIM39Q9HCM9 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
TRIM39Q9HCM9 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TRIM39Q9HCM9 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
TRIM39Q9HCM9 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TRIM39Q9HCM9 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TRIM39Q9HCM9 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
TRIM39Q9HCM9 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC21.16■□□□□ 0.98
TRIM39Q9HCM9 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
TRIM39Q9HCM9 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
TRIM39Q9HCM9 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TRIM39Q9HCM9 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
TRIM39Q9HCM9 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC21.16■□□□□ 0.98
TRIM39Q9HCM9 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC21.16■□□□□ 0.98
TRIM39Q9HCM9 KRT18P5-201ENST00000436075 1291 ntBASIC21.16■□□□□ 0.98
TRIM39Q9HCM9 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TRIM39Q9HCM9 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
TRIM39Q9HCM9 AC079140.4-201ENST00000507448 529 ntBASIC21.16■□□□□ 0.98
TRIM39Q9HCM9 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC21.16■□□□□ 0.98
TRIM39Q9HCM9 NTF6G-201ENST00000591094 616 ntBASIC21.16■□□□□ 0.98
TRIM39Q9HCM9 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC21.16■□□□□ 0.98
TRIM39Q9HCM9 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TRIM39Q9HCM9 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC21.16■□□□□ 0.98
TRIM39Q9HCM9 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC21.16■□□□□ 0.98
TRIM39Q9HCM9 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TRIM39Q9HCM9 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC21.15■□□□□ 0.98
TRIM39Q9HCM9 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
TRIM39Q9HCM9 AP006587.3-201ENST00000525742 1516 ntBASIC21.15■□□□□ 0.98
TRIM39Q9HCM9 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TRIM39Q9HCM9 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC21.15■□□□□ 0.98
TRIM39Q9HCM9 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC21.15■□□□□ 0.98
TRIM39Q9HCM9 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
TRIM39Q9HCM9 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TRIM39Q9HCM9 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
TRIM39Q9HCM9 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC21.15■□□□□ 0.98
TRIM39Q9HCM9 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TRIM39Q9HCM9 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
TRIM39Q9HCM9 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC21.15■□□□□ 0.98
TRIM39Q9HCM9 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
TRIM39Q9HCM9 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC21.14■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms