Protein–RNA interactions for Protein: P56589

PEX3, Peroxisomal biogenesis factor 3, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PEX3P56589 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC23.64■■□□□ 1.37
PEX3P56589 EP400NL-214ENST00000641289 2402 ntBASIC23.64■■□□□ 1.37
PEX3P56589 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC23.64■■□□□ 1.37
PEX3P56589 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
PEX3P56589 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
PEX3P56589 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC23.63■■□□□ 1.37
PEX3P56589 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
PEX3P56589 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC23.63■■□□□ 1.37
PEX3P56589 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC23.63■■□□□ 1.37
PEX3P56589 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC23.63■■□□□ 1.37
PEX3P56589 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC23.63■■□□□ 1.37
PEX3P56589 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC23.63■■□□□ 1.37
PEX3P56589 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC23.63■■□□□ 1.37
PEX3P56589 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC23.63■■□□□ 1.37
PEX3P56589 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC23.63■■□□□ 1.37
PEX3P56589 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC23.63■■□□□ 1.37
PEX3P56589 CPT2-209ENST00000636935 803 ntTSL 5 BASIC23.63■■□□□ 1.37
PEX3P56589 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
PEX3P56589 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
PEX3P56589 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC23.62■■□□□ 1.37
PEX3P56589 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
PEX3P56589 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
PEX3P56589 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
PEX3P56589 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
PEX3P56589 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC23.62■■□□□ 1.37
PEX3P56589 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC23.62■■□□□ 1.37
PEX3P56589 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
PEX3P56589 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC23.62■■□□□ 1.37
PEX3P56589 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC23.62■■□□□ 1.37
PEX3P56589 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC23.62■■□□□ 1.37
PEX3P56589 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
PEX3P56589 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
PEX3P56589 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC23.62■■□□□ 1.37
PEX3P56589 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
PEX3P56589 FAM99A-202ENST00000538190 1989 ntBASIC23.61■■□□□ 1.37
PEX3P56589 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC23.61■■□□□ 1.37
PEX3P56589 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
PEX3P56589 AC026471.6-201ENST00000622954 1905 ntBASIC23.61■■□□□ 1.37
PEX3P56589 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
PEX3P56589 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
PEX3P56589 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
PEX3P56589 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC23.61■■□□□ 1.37
PEX3P56589 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC23.61■■□□□ 1.37
PEX3P56589 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC23.61■■□□□ 1.37
PEX3P56589 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC23.61■■□□□ 1.37
PEX3P56589 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC23.61■■□□□ 1.37
PEX3P56589 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
PEX3P56589 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC23.6■■□□□ 1.37
PEX3P56589 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC23.6■■□□□ 1.37
PEX3P56589 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
PEX3P56589 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC23.6■■□□□ 1.37
PEX3P56589 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC23.6■■□□□ 1.37
PEX3P56589 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
PEX3P56589 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC23.6■■□□□ 1.37
PEX3P56589 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC23.6■■□□□ 1.37
PEX3P56589 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
PEX3P56589 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC23.6■■□□□ 1.37
PEX3P56589 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
PEX3P56589 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
PEX3P56589 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC23.6■■□□□ 1.37
PEX3P56589 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC23.6■■□□□ 1.37
PEX3P56589 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC23.6■■□□□ 1.37
PEX3P56589 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC23.6■■□□□ 1.37
PEX3P56589 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
PEX3P56589 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
PEX3P56589 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
PEX3P56589 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC23.59■■□□□ 1.37
PEX3P56589 AL162430.1-201ENST00000480705 870 ntBASIC23.59■■□□□ 1.37
PEX3P56589 AC079140.4-201ENST00000507448 529 ntBASIC23.59■■□□□ 1.37
PEX3P56589 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC23.59■■□□□ 1.37
PEX3P56589 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
PEX3P56589 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
PEX3P56589 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC23.59■■□□□ 1.37
PEX3P56589 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC23.58■■□□□ 1.37
PEX3P56589 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC23.58■■□□□ 1.37
PEX3P56589 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC23.58■■□□□ 1.37
PEX3P56589 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
PEX3P56589 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
PEX3P56589 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC23.58■■□□□ 1.37
PEX3P56589 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC23.58■■□□□ 1.37
PEX3P56589 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
PEX3P56589 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC23.58■■□□□ 1.37
PEX3P56589 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
PEX3P56589 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC23.58■■□□□ 1.37
PEX3P56589 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
PEX3P56589 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC23.57■■□□□ 1.36
PEX3P56589 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC23.57■■□□□ 1.36
PEX3P56589 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC23.57■■□□□ 1.36
PEX3P56589 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC23.57■■□□□ 1.36
PEX3P56589 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC23.57■■□□□ 1.36
PEX3P56589 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC23.57■■□□□ 1.36
PEX3P56589 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC23.57■■□□□ 1.36
PEX3P56589 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC23.57■■□□□ 1.36
PEX3P56589 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
PEX3P56589 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
PEX3P56589 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
PEX3P56589 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC23.56■■□□□ 1.36
PEX3P56589 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC23.56■■□□□ 1.36
PEX3P56589 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
PEX3P56589 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC23.56■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 135.2 ms