Protein–RNA interactions for Protein: P50479

PDLIM4, PDZ and LIM domain protein 4, humanhuman

Predictions only

Length 330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4P50479 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PDLIM4P50479 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
PDLIM4P50479 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
PDLIM4P50479 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PDLIM4P50479 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC18.14■□□□□ 0.49
PDLIM4P50479 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC18.14■□□□□ 0.49
PDLIM4P50479 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC18.14■□□□□ 0.49
PDLIM4P50479 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC18.14■□□□□ 0.49
PDLIM4P50479 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PDLIM4P50479 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC18.14■□□□□ 0.49
PDLIM4P50479 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PDLIM4P50479 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
PDLIM4P50479 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
PDLIM4P50479 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC18.14■□□□□ 0.49
PDLIM4P50479 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
PDLIM4P50479 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PDLIM4P50479 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
PDLIM4P50479 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
PDLIM4P50479 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
PDLIM4P50479 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
PDLIM4P50479 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
PDLIM4P50479 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PDLIM4P50479 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PDLIM4P50479 AC079089.2-201ENST00000531211 1277 ntBASIC18.13■□□□□ 0.49
PDLIM4P50479 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
PDLIM4P50479 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PDLIM4P50479 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PDLIM4P50479 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
PDLIM4P50479 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC18.13■□□□□ 0.49
PDLIM4P50479 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
PDLIM4P50479 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
PDLIM4P50479 LINC00565-201ENST00000562710 2331 ntBASIC18.12■□□□□ 0.49
PDLIM4P50479 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
PDLIM4P50479 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
PDLIM4P50479 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
PDLIM4P50479 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
PDLIM4P50479 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
PDLIM4P50479 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC18.12■□□□□ 0.49
PDLIM4P50479 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
PDLIM4P50479 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC18.12■□□□□ 0.49
PDLIM4P50479 PPP1R14BP3-201ENST00000509033 445 ntBASIC18.12■□□□□ 0.49
PDLIM4P50479 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC18.12■□□□□ 0.49
PDLIM4P50479 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC18.12■□□□□ 0.49
PDLIM4P50479 AC104187.1-201ENST00000607510 612 ntBASIC18.12■□□□□ 0.49
PDLIM4P50479 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
PDLIM4P50479 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
PDLIM4P50479 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC18.12■□□□□ 0.49
PDLIM4P50479 LINC01960-201ENST00000563759 1884 ntBASIC18.12■□□□□ 0.49
PDLIM4P50479 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
PDLIM4P50479 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
PDLIM4P50479 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
PDLIM4P50479 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
PDLIM4P50479 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
PDLIM4P50479 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC18.11■□□□□ 0.49
PDLIM4P50479 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC18.11■□□□□ 0.49
PDLIM4P50479 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PDLIM4P50479 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PDLIM4P50479 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PDLIM4P50479 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
PDLIM4P50479 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC18.11■□□□□ 0.49
PDLIM4P50479 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PDLIM4P50479 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC18.11■□□□□ 0.49
PDLIM4P50479 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC18.11■□□□□ 0.49
PDLIM4P50479 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
PDLIM4P50479 MED17-221ENST00000639724 2317 ntTSL 5 BASIC18.11■□□□□ 0.49
PDLIM4P50479 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
PDLIM4P50479 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
PDLIM4P50479 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC18.1■□□□□ 0.49
PDLIM4P50479 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC18.1■□□□□ 0.49
PDLIM4P50479 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
PDLIM4P50479 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
PDLIM4P50479 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC18.1■□□□□ 0.49
PDLIM4P50479 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
PDLIM4P50479 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
PDLIM4P50479 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
PDLIM4P50479 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC18.1■□□□□ 0.49
PDLIM4P50479 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC18.1■□□□□ 0.49
PDLIM4P50479 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC18.1■□□□□ 0.49
PDLIM4P50479 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC18.1■□□□□ 0.49
PDLIM4P50479 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PDLIM4P50479 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PDLIM4P50479 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
PDLIM4P50479 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
PDLIM4P50479 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PDLIM4P50479 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC18.09■□□□□ 0.49
PDLIM4P50479 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
PDLIM4P50479 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PDLIM4P50479 USP48-205ENST00000421625 2818 ntTSL 2 BASIC18.09■□□□□ 0.49
PDLIM4P50479 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
PDLIM4P50479 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PDLIM4P50479 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
PDLIM4P50479 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PDLIM4P50479 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PDLIM4P50479 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
PDLIM4P50479 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
PDLIM4P50479 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PDLIM4P50479 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PDLIM4P50479 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC18.09■□□□□ 0.49
PDLIM4P50479 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC18.09■□□□□ 0.49
PDLIM4P50479 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC18.09■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms