Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HLA-DMBP28068 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC16.28■□□□□ 0.2
HLA-DMBP28068 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HLA-DMBP28068 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC16.28■□□□□ 0.2
HLA-DMBP28068 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC16.28■□□□□ 0.2
HLA-DMBP28068 AC010525.1-201ENST00000585559 441 ntBASIC16.28■□□□□ 0.2
HLA-DMBP28068 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HLA-DMBP28068 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HLA-DMBP28068 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HLA-DMBP28068 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HLA-DMBP28068 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HLA-DMBP28068 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
HLA-DMBP28068 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HLA-DMBP28068 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
HLA-DMBP28068 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HLA-DMBP28068 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HLA-DMBP28068 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HLA-DMBP28068 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HLA-DMBP28068 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
HLA-DMBP28068 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
HLA-DMBP28068 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HLA-DMBP28068 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HLA-DMBP28068 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HLA-DMBP28068 SRD5A1P1-201ENST00000442297 786 ntBASIC16.27■□□□□ 0.2
HLA-DMBP28068 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC16.27■□□□□ 0.2
HLA-DMBP28068 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
HLA-DMBP28068 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
HLA-DMBP28068 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
HLA-DMBP28068 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.19
HLA-DMBP28068 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
HLA-DMBP28068 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.19
HLA-DMBP28068 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
HLA-DMBP28068 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.19
HLA-DMBP28068 Z98882.1-201ENST00000622160 2253 ntBASIC16.26■□□□□ 0.19
HLA-DMBP28068 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
HLA-DMBP28068 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HLA-DMBP28068 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HLA-DMBP28068 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC16.26■□□□□ 0.19
HLA-DMBP28068 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
HLA-DMBP28068 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HLA-DMBP28068 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HLA-DMBP28068 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC16.26■□□□□ 0.19
HLA-DMBP28068 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC16.26■□□□□ 0.19
HLA-DMBP28068 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC16.26■□□□□ 0.19
HLA-DMBP28068 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC16.26■□□□□ 0.19
HLA-DMBP28068 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HLA-DMBP28068 OR7E47P-201ENST00000546390 1422 ntBASIC16.26■□□□□ 0.19
HLA-DMBP28068 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
HLA-DMBP28068 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HLA-DMBP28068 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HLA-DMBP28068 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
HLA-DMBP28068 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HLA-DMBP28068 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC16.25■□□□□ 0.19
HLA-DMBP28068 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
HLA-DMBP28068 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC16.25■□□□□ 0.19
HLA-DMBP28068 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
HLA-DMBP28068 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
HLA-DMBP28068 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC16.25■□□□□ 0.19
HLA-DMBP28068 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC16.25■□□□□ 0.19
HLA-DMBP28068 AC110285.6-201ENST00000617652 491 ntBASIC16.25■□□□□ 0.19
HLA-DMBP28068 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC16.25■□□□□ 0.19
HLA-DMBP28068 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
HLA-DMBP28068 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HLA-DMBP28068 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
HLA-DMBP28068 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
HLA-DMBP28068 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC16.25■□□□□ 0.19
HLA-DMBP28068 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HLA-DMBP28068 AL024507.2-201ENST00000606070 2574 ntBASIC16.25■□□□□ 0.19
HLA-DMBP28068 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
HLA-DMBP28068 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
HLA-DMBP28068 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HLA-DMBP28068 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
HLA-DMBP28068 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HLA-DMBP28068 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HLA-DMBP28068 MIR638-201ENST00000385237 100 ntBASIC16.24■□□□□ 0.19
HLA-DMBP28068 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC16.24■□□□□ 0.19
HLA-DMBP28068 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
HLA-DMBP28068 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
HLA-DMBP28068 RBM38-205ENST00000440234 686 ntTSL 2 BASIC16.24■□□□□ 0.19
HLA-DMBP28068 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
HLA-DMBP28068 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
HLA-DMBP28068 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
HLA-DMBP28068 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HLA-DMBP28068 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC16.24■□□□□ 0.19
HLA-DMBP28068 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC16.24■□□□□ 0.19
HLA-DMBP28068 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC16.24■□□□□ 0.19
HLA-DMBP28068 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
HLA-DMBP28068 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
HLA-DMBP28068 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC16.23■□□□□ 0.19
HLA-DMBP28068 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC16.23■□□□□ 0.19
HLA-DMBP28068 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC16.23■□□□□ 0.19
HLA-DMBP28068 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC16.23■□□□□ 0.19
HLA-DMBP28068 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
HLA-DMBP28068 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC16.23■□□□□ 0.19
HLA-DMBP28068 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC16.23■□□□□ 0.19
HLA-DMBP28068 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
HLA-DMBP28068 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HLA-DMBP28068 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC16.23■□□□□ 0.19
HLA-DMBP28068 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HLA-DMBP28068 OR2I1P-207ENST00000453522 948 ntBASIC16.23■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 16.4 ms