Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
CLCF1Q9UBD9 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CLCF1Q9UBD9 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CLCF1Q9UBD9 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC19.11■□□□□ 0.65
CLCF1Q9UBD9 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC19.11■□□□□ 0.65
CLCF1Q9UBD9 AC104187.1-201ENST00000607510 612 ntBASIC19.11■□□□□ 0.65
CLCF1Q9UBD9 WWOX-218ENST00000627394 894 ntTSL 5 BASIC19.11■□□□□ 0.65
CLCF1Q9UBD9 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CLCF1Q9UBD9 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
CLCF1Q9UBD9 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC19.11■□□□□ 0.65
CLCF1Q9UBD9 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CLCF1Q9UBD9 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
CLCF1Q9UBD9 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CLCF1Q9UBD9 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CLCF1Q9UBD9 ESRRAP2-201ENST00000418437 1549 ntBASIC19.1■□□□□ 0.65
CLCF1Q9UBD9 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC19.1■□□□□ 0.65
CLCF1Q9UBD9 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CLCF1Q9UBD9 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CLCF1Q9UBD9 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CLCF1Q9UBD9 GAS2L1P2-201ENST00000436355 1356 ntBASIC19.1■□□□□ 0.65
CLCF1Q9UBD9 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CLCF1Q9UBD9 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
CLCF1Q9UBD9 FXN-202ENST00000396364 980 ntTSL 5 BASIC19.1■□□□□ 0.65
CLCF1Q9UBD9 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CLCF1Q9UBD9 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CLCF1Q9UBD9 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CLCF1Q9UBD9 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CLCF1Q9UBD9 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CLCF1Q9UBD9 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC19.1■□□□□ 0.65
CLCF1Q9UBD9 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC19.1■□□□□ 0.65
CLCF1Q9UBD9 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CLCF1Q9UBD9 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CLCF1Q9UBD9 AP006587.3-201ENST00000525742 1516 ntBASIC19.1■□□□□ 0.65
CLCF1Q9UBD9 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CLCF1Q9UBD9 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CLCF1Q9UBD9 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CLCF1Q9UBD9 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
CLCF1Q9UBD9 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CLCF1Q9UBD9 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC19.09■□□□□ 0.65
CLCF1Q9UBD9 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CLCF1Q9UBD9 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CLCF1Q9UBD9 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC19.09■□□□□ 0.65
CLCF1Q9UBD9 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC19.09■□□□□ 0.65
CLCF1Q9UBD9 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
CLCF1Q9UBD9 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC19.09■□□□□ 0.65
CLCF1Q9UBD9 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CLCF1Q9UBD9 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CLCF1Q9UBD9 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CLCF1Q9UBD9 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
CLCF1Q9UBD9 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
CLCF1Q9UBD9 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
CLCF1Q9UBD9 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
CLCF1Q9UBD9 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
CLCF1Q9UBD9 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
CLCF1Q9UBD9 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
CLCF1Q9UBD9 CASK-201ENST00000378154 2494 ntTSL 5 BASIC19.08■□□□□ 0.65
CLCF1Q9UBD9 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CLCF1Q9UBD9 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC19.08■□□□□ 0.64
CLCF1Q9UBD9 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
CLCF1Q9UBD9 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
CLCF1Q9UBD9 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CLCF1Q9UBD9 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC19.08■□□□□ 0.64
CLCF1Q9UBD9 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CLCF1Q9UBD9 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CLCF1Q9UBD9 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CLCF1Q9UBD9 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CLCF1Q9UBD9 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CLCF1Q9UBD9 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
CLCF1Q9UBD9 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC19.07■□□□□ 0.64
CLCF1Q9UBD9 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC19.07■□□□□ 0.64
CLCF1Q9UBD9 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CLCF1Q9UBD9 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC19.07■□□□□ 0.64
CLCF1Q9UBD9 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CLCF1Q9UBD9 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CLCF1Q9UBD9 KRT18P11-201ENST00000435214 1283 ntBASIC19.07■□□□□ 0.64
CLCF1Q9UBD9 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CLCF1Q9UBD9 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CLCF1Q9UBD9 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC19.07■□□□□ 0.64
CLCF1Q9UBD9 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CLCF1Q9UBD9 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC19.07■□□□□ 0.64
CLCF1Q9UBD9 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC19.07■□□□□ 0.64
CLCF1Q9UBD9 AC080038.1-201ENST00000611274 1154 ntBASIC19.07■□□□□ 0.64
CLCF1Q9UBD9 BID-214ENST00000617586 542 ntTSL 5 BASIC19.07■□□□□ 0.64
CLCF1Q9UBD9 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
CLCF1Q9UBD9 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CLCF1Q9UBD9 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CLCF1Q9UBD9 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
CLCF1Q9UBD9 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
CLCF1Q9UBD9 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
CLCF1Q9UBD9 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CLCF1Q9UBD9 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC19.06■□□□□ 0.64
CLCF1Q9UBD9 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
CLCF1Q9UBD9 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CLCF1Q9UBD9 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CLCF1Q9UBD9 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CLCF1Q9UBD9 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC19.06■□□□□ 0.64
CLCF1Q9UBD9 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC19.05■□□□□ 0.64
CLCF1Q9UBD9 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
CLCF1Q9UBD9 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CLCF1Q9UBD9 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms