Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
TRIM56Q9BRZ2 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
TRIM56Q9BRZ2 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
TRIM56Q9BRZ2 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
TRIM56Q9BRZ2 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
TRIM56Q9BRZ2 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
TRIM56Q9BRZ2 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
TRIM56Q9BRZ2 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC21.84■■□□□ 1.09
TRIM56Q9BRZ2 RPP21-222ENST00000433076 577 ntTSL 2 BASIC21.84■■□□□ 1.09
TRIM56Q9BRZ2 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
TRIM56Q9BRZ2 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC21.84■■□□□ 1.09
TRIM56Q9BRZ2 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC21.84■■□□□ 1.09
TRIM56Q9BRZ2 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC21.84■■□□□ 1.09
TRIM56Q9BRZ2 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC21.84■■□□□ 1.09
TRIM56Q9BRZ2 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC21.84■■□□□ 1.09
TRIM56Q9BRZ2 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
TRIM56Q9BRZ2 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC21.84■■□□□ 1.09
TRIM56Q9BRZ2 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
TRIM56Q9BRZ2 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
TRIM56Q9BRZ2 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC21.84■■□□□ 1.09
TRIM56Q9BRZ2 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC21.84■■□□□ 1.09
TRIM56Q9BRZ2 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC21.84■■□□□ 1.09
TRIM56Q9BRZ2 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC21.84■■□□□ 1.09
TRIM56Q9BRZ2 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
TRIM56Q9BRZ2 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
TRIM56Q9BRZ2 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC21.83■■□□□ 1.09
TRIM56Q9BRZ2 AC019069.1-201ENST00000610008 1333 ntBASIC21.83■■□□□ 1.09
TRIM56Q9BRZ2 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
TRIM56Q9BRZ2 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC21.83■■□□□ 1.09
TRIM56Q9BRZ2 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
TRIM56Q9BRZ2 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
TRIM56Q9BRZ2 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.09
TRIM56Q9BRZ2 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
TRIM56Q9BRZ2 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
TRIM56Q9BRZ2 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
TRIM56Q9BRZ2 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC21.83■■□□□ 1.09
TRIM56Q9BRZ2 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.09
TRIM56Q9BRZ2 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC21.83■■□□□ 1.09
TRIM56Q9BRZ2 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC21.83■■□□□ 1.09
TRIM56Q9BRZ2 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
TRIM56Q9BRZ2 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
TRIM56Q9BRZ2 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC21.83■■□□□ 1.08
TRIM56Q9BRZ2 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
TRIM56Q9BRZ2 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
TRIM56Q9BRZ2 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC21.82■■□□□ 1.08
TRIM56Q9BRZ2 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
TRIM56Q9BRZ2 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
TRIM56Q9BRZ2 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
TRIM56Q9BRZ2 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
TRIM56Q9BRZ2 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
TRIM56Q9BRZ2 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC21.82■■□□□ 1.08
TRIM56Q9BRZ2 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC21.82■■□□□ 1.08
TRIM56Q9BRZ2 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC21.82■■□□□ 1.08
TRIM56Q9BRZ2 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
TRIM56Q9BRZ2 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
TRIM56Q9BRZ2 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
TRIM56Q9BRZ2 AC005229.4-201ENST00000610085 2198 ntBASIC21.82■■□□□ 1.08
TRIM56Q9BRZ2 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
TRIM56Q9BRZ2 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
TRIM56Q9BRZ2 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
TRIM56Q9BRZ2 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC21.82■■□□□ 1.08
TRIM56Q9BRZ2 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
TRIM56Q9BRZ2 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC21.81■■□□□ 1.08
TRIM56Q9BRZ2 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC21.81■■□□□ 1.08
TRIM56Q9BRZ2 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC21.81■■□□□ 1.08
TRIM56Q9BRZ2 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC21.81■■□□□ 1.08
TRIM56Q9BRZ2 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
TRIM56Q9BRZ2 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
TRIM56Q9BRZ2 PTCHD3P2-201ENST00000424937 1205 ntBASIC21.81■■□□□ 1.08
TRIM56Q9BRZ2 AC131281.2-201ENST00000520478 145 ntBASIC21.81■■□□□ 1.08
TRIM56Q9BRZ2 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC21.81■■□□□ 1.08
TRIM56Q9BRZ2 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC21.81■■□□□ 1.08
TRIM56Q9BRZ2 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
TRIM56Q9BRZ2 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC21.81■■□□□ 1.08
TRIM56Q9BRZ2 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC21.81■■□□□ 1.08
TRIM56Q9BRZ2 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
TRIM56Q9BRZ2 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC21.81■■□□□ 1.08
TRIM56Q9BRZ2 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
TRIM56Q9BRZ2 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
TRIM56Q9BRZ2 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
TRIM56Q9BRZ2 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
TRIM56Q9BRZ2 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
TRIM56Q9BRZ2 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC21.8■■□□□ 1.08
TRIM56Q9BRZ2 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC21.8■■□□□ 1.08
TRIM56Q9BRZ2 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
TRIM56Q9BRZ2 SERBP1P1-201ENST00000396021 1160 ntBASIC21.8■■□□□ 1.08
TRIM56Q9BRZ2 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC21.8■■□□□ 1.08
TRIM56Q9BRZ2 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
TRIM56Q9BRZ2 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
TRIM56Q9BRZ2 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC21.8■■□□□ 1.08
TRIM56Q9BRZ2 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
TRIM56Q9BRZ2 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
TRIM56Q9BRZ2 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
TRIM56Q9BRZ2 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
TRIM56Q9BRZ2 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC21.79■■□□□ 1.08
TRIM56Q9BRZ2 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
TRIM56Q9BRZ2 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
TRIM56Q9BRZ2 AC079089.2-201ENST00000531211 1277 ntBASIC21.79■■□□□ 1.08
TRIM56Q9BRZ2 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC21.79■■□□□ 1.08
TRIM56Q9BRZ2 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 44.1 ms