Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CPSF4LA6NMK7 OR2I1P-207ENST00000453522 948 ntBASIC19.79■□□□□ 0.76
CPSF4LA6NMK7 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CPSF4LA6NMK7 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC19.79■□□□□ 0.76
CPSF4LA6NMK7 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CPSF4LA6NMK7 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CPSF4LA6NMK7 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC19.78■□□□□ 0.76
CPSF4LA6NMK7 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
CPSF4LA6NMK7 OR7E47P-201ENST00000546390 1422 ntBASIC19.78■□□□□ 0.76
CPSF4LA6NMK7 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC19.78■□□□□ 0.76
CPSF4LA6NMK7 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CPSF4LA6NMK7 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC19.78■□□□□ 0.76
CPSF4LA6NMK7 TRIR-202ENST00000588213 841 ntTSL 3 BASIC19.78■□□□□ 0.76
CPSF4LA6NMK7 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
CPSF4LA6NMK7 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
CPSF4LA6NMK7 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC19.78■□□□□ 0.76
CPSF4LA6NMK7 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CPSF4LA6NMK7 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
CPSF4LA6NMK7 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CPSF4LA6NMK7 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
CPSF4LA6NMK7 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC19.77■□□□□ 0.76
CPSF4LA6NMK7 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CPSF4LA6NMK7 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CPSF4LA6NMK7 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CPSF4LA6NMK7 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CPSF4LA6NMK7 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CPSF4LA6NMK7 PTCHD3P2-201ENST00000424937 1205 ntBASIC19.77■□□□□ 0.76
CPSF4LA6NMK7 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC19.77■□□□□ 0.76
CPSF4LA6NMK7 AC010525.1-201ENST00000585559 441 ntBASIC19.77■□□□□ 0.76
CPSF4LA6NMK7 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
CPSF4LA6NMK7 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC19.77■□□□□ 0.76
CPSF4LA6NMK7 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC19.77■□□□□ 0.76
CPSF4LA6NMK7 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
CPSF4LA6NMK7 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC19.77■□□□□ 0.76
CPSF4LA6NMK7 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
CPSF4LA6NMK7 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.75
CPSF4LA6NMK7 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.75
CPSF4LA6NMK7 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.75
CPSF4LA6NMK7 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CPSF4LA6NMK7 AC026471.6-201ENST00000622954 1905 ntBASIC19.76■□□□□ 0.75
CPSF4LA6NMK7 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CPSF4LA6NMK7 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CPSF4LA6NMK7 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
CPSF4LA6NMK7 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC19.76■□□□□ 0.75
CPSF4LA6NMK7 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CPSF4LA6NMK7 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
CPSF4LA6NMK7 RPP21-222ENST00000433076 577 ntTSL 2 BASIC19.76■□□□□ 0.75
CPSF4LA6NMK7 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CPSF4LA6NMK7 AC068587.7-201ENST00000641602 218 ntBASIC19.76■□□□□ 0.75
CPSF4LA6NMK7 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CPSF4LA6NMK7 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CPSF4LA6NMK7 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC19.76■□□□□ 0.75
CPSF4LA6NMK7 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
CPSF4LA6NMK7 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CPSF4LA6NMK7 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CPSF4LA6NMK7 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CPSF4LA6NMK7 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC19.75■□□□□ 0.75
CPSF4LA6NMK7 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CPSF4LA6NMK7 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CPSF4LA6NMK7 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
CPSF4LA6NMK7 AC087239.1-201ENST00000622671 572 ntBASIC19.75■□□□□ 0.75
CPSF4LA6NMK7 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CPSF4LA6NMK7 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
CPSF4LA6NMK7 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC19.75■□□□□ 0.75
CPSF4LA6NMK7 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC19.75■□□□□ 0.75
CPSF4LA6NMK7 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CPSF4LA6NMK7 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
CPSF4LA6NMK7 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
CPSF4LA6NMK7 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CPSF4LA6NMK7 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CPSF4LA6NMK7 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
CPSF4LA6NMK7 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CPSF4LA6NMK7 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC19.74■□□□□ 0.75
CPSF4LA6NMK7 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CPSF4LA6NMK7 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC19.74■□□□□ 0.75
CPSF4LA6NMK7 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC19.74■□□□□ 0.75
CPSF4LA6NMK7 MIR4466-201ENST00000606121 54 ntBASIC19.74■□□□□ 0.75
CPSF4LA6NMK7 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CPSF4LA6NMK7 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
CPSF4LA6NMK7 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC19.74■□□□□ 0.75
CPSF4LA6NMK7 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
CPSF4LA6NMK7 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CPSF4LA6NMK7 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC19.73■□□□□ 0.75
CPSF4LA6NMK7 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
CPSF4LA6NMK7 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CPSF4LA6NMK7 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
CPSF4LA6NMK7 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CPSF4LA6NMK7 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CPSF4LA6NMK7 SERBP1P1-201ENST00000396021 1160 ntBASIC19.73■□□□□ 0.75
CPSF4LA6NMK7 HES6-206ENST00000409574 738 ntTSL 2 BASIC19.73■□□□□ 0.75
CPSF4LA6NMK7 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC19.73■□□□□ 0.75
CPSF4LA6NMK7 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CPSF4LA6NMK7 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CPSF4LA6NMK7 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
CPSF4LA6NMK7 SYT6-210ENST00000641643 1587 ntBASIC19.73■□□□□ 0.75
CPSF4LA6NMK7 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CPSF4LA6NMK7 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC19.73■□□□□ 0.75
CPSF4LA6NMK7 AC005229.4-201ENST00000610085 2198 ntBASIC19.73■□□□□ 0.75
CPSF4LA6NMK7 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CPSF4LA6NMK7 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms