Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC18■□□□□ 0.47
CCDC28AQ8IWP9 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC18■□□□□ 0.47
CCDC28AQ8IWP9 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC28AQ8IWP9 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC28AQ8IWP9 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC28AQ8IWP9 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC28AQ8IWP9 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC28AQ8IWP9 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC28AQ8IWP9 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC17.99■□□□□ 0.47
CCDC28AQ8IWP9 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC28AQ8IWP9 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC28AQ8IWP9 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC28AQ8IWP9 CHST11-203ENST00000547956 936 ntTSL 2 BASIC17.99■□□□□ 0.47
CCDC28AQ8IWP9 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC17.99■□□□□ 0.47
CCDC28AQ8IWP9 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC28AQ8IWP9 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC28AQ8IWP9 AC120498.9-201ENST00000339021 3867 ntBASIC17.98■□□□□ 0.47
CCDC28AQ8IWP9 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC28AQ8IWP9 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC17.98■□□□□ 0.47
CCDC28AQ8IWP9 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC28AQ8IWP9 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC28AQ8IWP9 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC28AQ8IWP9 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC28AQ8IWP9 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC28AQ8IWP9 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC28AQ8IWP9 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC17.98■□□□□ 0.47
CCDC28AQ8IWP9 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC28AQ8IWP9 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
CCDC28AQ8IWP9 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC28AQ8IWP9 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC17.98■□□□□ 0.47
CCDC28AQ8IWP9 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC28AQ8IWP9 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC17.98■□□□□ 0.47
CCDC28AQ8IWP9 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC28AQ8IWP9 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC28AQ8IWP9 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC28AQ8IWP9 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC28AQ8IWP9 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC28AQ8IWP9 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC17.97■□□□□ 0.47
CCDC28AQ8IWP9 AC016575.1-201ENST00000607026 382 ntBASIC17.97■□□□□ 0.47
CCDC28AQ8IWP9 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC28AQ8IWP9 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
CCDC28AQ8IWP9 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC28AQ8IWP9 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC28AQ8IWP9 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC28AQ8IWP9 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC28AQ8IWP9 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC28AQ8IWP9 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC28AQ8IWP9 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
CCDC28AQ8IWP9 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC17.96■□□□□ 0.47
CCDC28AQ8IWP9 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC17.96■□□□□ 0.47
CCDC28AQ8IWP9 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC28AQ8IWP9 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
CCDC28AQ8IWP9 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC17.96■□□□□ 0.47
CCDC28AQ8IWP9 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC28AQ8IWP9 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC17.96■□□□□ 0.47
CCDC28AQ8IWP9 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC17.96■□□□□ 0.47
CCDC28AQ8IWP9 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC17.96■□□□□ 0.47
CCDC28AQ8IWP9 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC28AQ8IWP9 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC17.96■□□□□ 0.47
CCDC28AQ8IWP9 AC010542.4-201ENST00000563151 1910 ntBASIC17.96■□□□□ 0.47
CCDC28AQ8IWP9 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC17.95■□□□□ 0.46
CCDC28AQ8IWP9 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC28AQ8IWP9 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC28AQ8IWP9 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC28AQ8IWP9 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC28AQ8IWP9 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC28AQ8IWP9 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC28AQ8IWP9 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC17.95■□□□□ 0.46
CCDC28AQ8IWP9 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC28AQ8IWP9 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
CCDC28AQ8IWP9 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC28AQ8IWP9 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC28AQ8IWP9 AC126177.7-201ENST00000547904 679 ntBASIC17.95■□□□□ 0.46
CCDC28AQ8IWP9 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC28AQ8IWP9 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC28AQ8IWP9 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC17.95■□□□□ 0.46
CCDC28AQ8IWP9 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC17.95■□□□□ 0.46
CCDC28AQ8IWP9 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC28AQ8IWP9 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC28AQ8IWP9 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC28AQ8IWP9 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC28AQ8IWP9 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC28AQ8IWP9 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
CCDC28AQ8IWP9 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
CCDC28AQ8IWP9 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
CCDC28AQ8IWP9 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC28AQ8IWP9 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC28AQ8IWP9 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC28AQ8IWP9 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC28AQ8IWP9 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC28AQ8IWP9 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC28AQ8IWP9 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC28AQ8IWP9 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
CCDC28AQ8IWP9 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC28AQ8IWP9 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC28AQ8IWP9 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC28AQ8IWP9 HLA-V-202ENST00000446817 847 ntBASIC17.94■□□□□ 0.46
CCDC28AQ8IWP9 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC17.94■□□□□ 0.46
CCDC28AQ8IWP9 PVT1-219ENST00000523427 938 ntTSL 3 BASIC17.94■□□□□ 0.46
CCDC28AQ8IWP9 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms