Protein–RNA interactions for Protein: S4R434

TMEM56-RWDD3, TMEM56-RWDD3 readthrough, humanhuman

Predictions only

Length 201 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM56-RWDD3S4R434 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
TMEM56-RWDD3S4R434 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
TMEM56-RWDD3S4R434 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
TMEM56-RWDD3S4R434 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC22.25■■□□□ 1.15
TMEM56-RWDD3S4R434 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
TMEM56-RWDD3S4R434 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
TMEM56-RWDD3S4R434 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC22.24■■□□□ 1.15
TMEM56-RWDD3S4R434 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
TMEM56-RWDD3S4R434 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC22.23■■□□□ 1.15
TMEM56-RWDD3S4R434 MVK-208ENST00000539696 608 ntTSL 5 BASIC22.23■■□□□ 1.15
TMEM56-RWDD3S4R434 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC22.22■■□□□ 1.15
TMEM56-RWDD3S4R434 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC22.22■■□□□ 1.15
TMEM56-RWDD3S4R434 AC139426.1-201ENST00000568218 2529 ntBASIC22.22■■□□□ 1.15
TMEM56-RWDD3S4R434 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
TMEM56-RWDD3S4R434 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC22.21■■□□□ 1.15
TMEM56-RWDD3S4R434 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
TMEM56-RWDD3S4R434 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
TMEM56-RWDD3S4R434 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
TMEM56-RWDD3S4R434 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC22.19■■□□□ 1.14
TMEM56-RWDD3S4R434 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
TMEM56-RWDD3S4R434 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
TMEM56-RWDD3S4R434 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
TMEM56-RWDD3S4R434 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
TMEM56-RWDD3S4R434 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC22.17■■□□□ 1.14
TMEM56-RWDD3S4R434 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
TMEM56-RWDD3S4R434 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC22.16■■□□□ 1.14
TMEM56-RWDD3S4R434 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC22.16■■□□□ 1.14
TMEM56-RWDD3S4R434 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC22.15■■□□□ 1.14
TMEM56-RWDD3S4R434 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
TMEM56-RWDD3S4R434 ST7-AS1-201ENST00000456775 1889 ntBASIC22.13■■□□□ 1.13
TMEM56-RWDD3S4R434 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
TMEM56-RWDD3S4R434 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC22.12■■□□□ 1.13
TMEM56-RWDD3S4R434 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
TMEM56-RWDD3S4R434 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
TMEM56-RWDD3S4R434 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
TMEM56-RWDD3S4R434 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC22.09■■□□□ 1.13
TMEM56-RWDD3S4R434 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC22.09■■□□□ 1.13
TMEM56-RWDD3S4R434 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC22.08■■□□□ 1.13
TMEM56-RWDD3S4R434 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC22.08■■□□□ 1.13
TMEM56-RWDD3S4R434 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC22.08■■□□□ 1.12
TMEM56-RWDD3S4R434 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC22.08■■□□□ 1.12
TMEM56-RWDD3S4R434 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
TMEM56-RWDD3S4R434 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
TMEM56-RWDD3S4R434 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
TMEM56-RWDD3S4R434 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC22.06■■□□□ 1.12
TMEM56-RWDD3S4R434 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC22.05■■□□□ 1.12
TMEM56-RWDD3S4R434 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC22.05■■□□□ 1.12
TMEM56-RWDD3S4R434 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC22.04■■□□□ 1.12
TMEM56-RWDD3S4R434 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC22.04■■□□□ 1.12
TMEM56-RWDD3S4R434 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC22.04■■□□□ 1.12
TMEM56-RWDD3S4R434 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
TMEM56-RWDD3S4R434 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
TMEM56-RWDD3S4R434 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC22.02■■□□□ 1.12
TMEM56-RWDD3S4R434 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.11
TMEM56-RWDD3S4R434 AL161658.1-201ENST00000623641 1967 ntBASIC22.01■■□□□ 1.11
TMEM56-RWDD3S4R434 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC22.01■■□□□ 1.11
TMEM56-RWDD3S4R434 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
TMEM56-RWDD3S4R434 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
TMEM56-RWDD3S4R434 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC22■■□□□ 1.11
TMEM56-RWDD3S4R434 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
TMEM56-RWDD3S4R434 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC21.99■■□□□ 1.11
TMEM56-RWDD3S4R434 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC21.98■■□□□ 1.11
TMEM56-RWDD3S4R434 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
TMEM56-RWDD3S4R434 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC21.97■■□□□ 1.11
TMEM56-RWDD3S4R434 AC006077.2-201ENST00000623591 457 ntBASIC21.97■■□□□ 1.11
TMEM56-RWDD3S4R434 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
TMEM56-RWDD3S4R434 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC21.96■■□□□ 1.11
TMEM56-RWDD3S4R434 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC21.96■■□□□ 1.11
TMEM56-RWDD3S4R434 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
TMEM56-RWDD3S4R434 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC21.95■■□□□ 1.1
TMEM56-RWDD3S4R434 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
TMEM56-RWDD3S4R434 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC21.95■■□□□ 1.1
TMEM56-RWDD3S4R434 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
TMEM56-RWDD3S4R434 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
TMEM56-RWDD3S4R434 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC21.94■■□□□ 1.1
TMEM56-RWDD3S4R434 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC21.94■■□□□ 1.1
TMEM56-RWDD3S4R434 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
TMEM56-RWDD3S4R434 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
TMEM56-RWDD3S4R434 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC21.93■■□□□ 1.1
TMEM56-RWDD3S4R434 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
TMEM56-RWDD3S4R434 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
TMEM56-RWDD3S4R434 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
TMEM56-RWDD3S4R434 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
TMEM56-RWDD3S4R434 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC21.91■■□□□ 1.1
TMEM56-RWDD3S4R434 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
TMEM56-RWDD3S4R434 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
TMEM56-RWDD3S4R434 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
TMEM56-RWDD3S4R434 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
TMEM56-RWDD3S4R434 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
TMEM56-RWDD3S4R434 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC21.89■■□□□ 1.09
TMEM56-RWDD3S4R434 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
TMEM56-RWDD3S4R434 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC21.88■■□□□ 1.09
TMEM56-RWDD3S4R434 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
TMEM56-RWDD3S4R434 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
TMEM56-RWDD3S4R434 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC21.88■■□□□ 1.09
TMEM56-RWDD3S4R434 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
TMEM56-RWDD3S4R434 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
TMEM56-RWDD3S4R434 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
TMEM56-RWDD3S4R434 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC21.86■■□□□ 1.09
TMEM56-RWDD3S4R434 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 17.9 ms