Protein–RNA interactions for Protein: Q96PZ7

CSMD1, CUB and sushi domain-containing protein 1, humanhuman

Predictions only

Length 3,565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1Q96PZ7 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC23.76■■□□□ 1.39
CSMD1Q96PZ7 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC23.76■■□□□ 1.39
CSMD1Q96PZ7 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC23.76■■□□□ 1.39
CSMD1Q96PZ7 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
CSMD1Q96PZ7 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC23.75■■□□□ 1.39
CSMD1Q96PZ7 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC23.75■■□□□ 1.39
CSMD1Q96PZ7 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC23.75■■□□□ 1.39
CSMD1Q96PZ7 MIR3648-2-201ENST00000581792 180 ntBASIC23.75■■□□□ 1.39
CSMD1Q96PZ7 MIR3648-1-201ENST00000615959 180 ntBASIC23.75■■□□□ 1.39
CSMD1Q96PZ7 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
CSMD1Q96PZ7 CR559946.2-201ENST00000623684 991 ntBASIC23.72■■□□□ 1.39
CSMD1Q96PZ7 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC23.72■■□□□ 1.39
CSMD1Q96PZ7 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
CSMD1Q96PZ7 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC23.72■■□□□ 1.39
CSMD1Q96PZ7 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC23.71■■□□□ 1.39
CSMD1Q96PZ7 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
CSMD1Q96PZ7 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC23.71■■□□□ 1.39
CSMD1Q96PZ7 DENR-202ENST00000455982 1052 ntTSL 5 BASIC23.7■■□□□ 1.38
CSMD1Q96PZ7 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC23.7■■□□□ 1.38
CSMD1Q96PZ7 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
CSMD1Q96PZ7 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC23.69■■□□□ 1.38
CSMD1Q96PZ7 AC016575.1-201ENST00000607026 382 ntBASIC23.69■■□□□ 1.38
CSMD1Q96PZ7 ABHD17AP3-201ENST00000503096 1137 ntBASIC23.68■■□□□ 1.38
CSMD1Q96PZ7 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC23.67■■□□□ 1.38
CSMD1Q96PZ7 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC23.67■■□□□ 1.38
CSMD1Q96PZ7 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC23.66■■□□□ 1.38
CSMD1Q96PZ7 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC23.65■■□□□ 1.38
CSMD1Q96PZ7 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
CSMD1Q96PZ7 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC23.65■■□□□ 1.38
CSMD1Q96PZ7 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC23.64■■□□□ 1.38
CSMD1Q96PZ7 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
CSMD1Q96PZ7 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC23.63■■□□□ 1.37
CSMD1Q96PZ7 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
CSMD1Q96PZ7 RNF166-209ENST00000567844 633 ntTSL 5 BASIC23.62■■□□□ 1.37
CSMD1Q96PZ7 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
CSMD1Q96PZ7 AC021231.2-201ENST00000594613 730 ntBASIC23.61■■□□□ 1.37
CSMD1Q96PZ7 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
CSMD1Q96PZ7 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
CSMD1Q96PZ7 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC23.58■■□□□ 1.37
CSMD1Q96PZ7 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC23.57■■□□□ 1.36
CSMD1Q96PZ7 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
CSMD1Q96PZ7 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC23.57■■□□□ 1.36
CSMD1Q96PZ7 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC23.56■■□□□ 1.36
CSMD1Q96PZ7 DUX4L29-201ENST00000425409 679 ntBASIC23.56■■□□□ 1.36
CSMD1Q96PZ7 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC23.56■■□□□ 1.36
CSMD1Q96PZ7 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC23.56■■□□□ 1.36
CSMD1Q96PZ7 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
CSMD1Q96PZ7 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC23.55■■□□□ 1.36
CSMD1Q96PZ7 GDI1-215ENST00000630693 786 ntTSL 4 BASIC23.54■■□□□ 1.36
CSMD1Q96PZ7 RARRES2P2-201ENST00000394842 485 ntBASIC23.53■■□□□ 1.36
CSMD1Q96PZ7 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
CSMD1Q96PZ7 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC23.49■■□□□ 1.35
CSMD1Q96PZ7 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
CSMD1Q96PZ7 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
CSMD1Q96PZ7 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
CSMD1Q96PZ7 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC23.47■■□□□ 1.35
CSMD1Q96PZ7 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC23.46■■□□□ 1.35
CSMD1Q96PZ7 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
CSMD1Q96PZ7 AGPS-202ENST00000409888 815 ntTSL 4 BASIC23.44■■□□□ 1.34
CSMD1Q96PZ7 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC23.43■■□□□ 1.34
CSMD1Q96PZ7 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC23.43■■□□□ 1.34
CSMD1Q96PZ7 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC23.42■■□□□ 1.34
CSMD1Q96PZ7 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
CSMD1Q96PZ7 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
CSMD1Q96PZ7 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
CSMD1Q96PZ7 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC23.42■■□□□ 1.34
CSMD1Q96PZ7 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC23.41■■□□□ 1.34
CSMD1Q96PZ7 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
CSMD1Q96PZ7 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
CSMD1Q96PZ7 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC23.41■■□□□ 1.34
CSMD1Q96PZ7 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC23.4■■□□□ 1.34
CSMD1Q96PZ7 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
CSMD1Q96PZ7 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
CSMD1Q96PZ7 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
CSMD1Q96PZ7 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
CSMD1Q96PZ7 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC23.37■■□□□ 1.33
CSMD1Q96PZ7 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
CSMD1Q96PZ7 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
CSMD1Q96PZ7 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC23.36■■□□□ 1.33
CSMD1Q96PZ7 ABHD17AP5-201ENST00000580133 923 ntBASIC23.36■■□□□ 1.33
CSMD1Q96PZ7 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC23.36■■□□□ 1.33
CSMD1Q96PZ7 ILK-212ENST00000532063 1617 ntTSL 2 BASIC23.36■■□□□ 1.33
CSMD1Q96PZ7 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
CSMD1Q96PZ7 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
CSMD1Q96PZ7 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC23.35■■□□□ 1.33
CSMD1Q96PZ7 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
CSMD1Q96PZ7 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
CSMD1Q96PZ7 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CSMD1Q96PZ7 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC23.31■■□□□ 1.32
CSMD1Q96PZ7 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
CSMD1Q96PZ7 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
CSMD1Q96PZ7 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
CSMD1Q96PZ7 LINC01971-201ENST00000617888 1048 ntBASIC23.3■■□□□ 1.32
CSMD1Q96PZ7 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CSMD1Q96PZ7 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CSMD1Q96PZ7 DUX4L11-201ENST00000611504 1267 ntBASIC23.27■■□□□ 1.32
CSMD1Q96PZ7 DUX4L12-201ENST00000614593 1267 ntBASIC23.27■■□□□ 1.32
CSMD1Q96PZ7 DUX4L14-201ENST00000621227 1267 ntBASIC23.27■■□□□ 1.32
CSMD1Q96PZ7 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC23.27■■□□□ 1.32
CSMD1Q96PZ7 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 14.9 ms