Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
DEPDC4Q8N2C3 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
DEPDC4Q8N2C3 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
DEPDC4Q8N2C3 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC25.02■■□□□ 1.6
DEPDC4Q8N2C3 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
DEPDC4Q8N2C3 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
DEPDC4Q8N2C3 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC25.02■■□□□ 1.6
DEPDC4Q8N2C3 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
DEPDC4Q8N2C3 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC25.02■■□□□ 1.6
DEPDC4Q8N2C3 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
DEPDC4Q8N2C3 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
DEPDC4Q8N2C3 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
DEPDC4Q8N2C3 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC25■■□□□ 1.59
DEPDC4Q8N2C3 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
DEPDC4Q8N2C3 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC24.98■■□□□ 1.59
DEPDC4Q8N2C3 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC24.98■■□□□ 1.59
DEPDC4Q8N2C3 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
DEPDC4Q8N2C3 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
DEPDC4Q8N2C3 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC24.96■■□□□ 1.59
DEPDC4Q8N2C3 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
DEPDC4Q8N2C3 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC24.96■■□□□ 1.59
DEPDC4Q8N2C3 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
DEPDC4Q8N2C3 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC24.95■■□□□ 1.58
DEPDC4Q8N2C3 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC24.95■■□□□ 1.58
DEPDC4Q8N2C3 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC24.95■■□□□ 1.58
DEPDC4Q8N2C3 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC24.94■■□□□ 1.58
DEPDC4Q8N2C3 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
DEPDC4Q8N2C3 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC24.93■■□□□ 1.58
DEPDC4Q8N2C3 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC24.93■■□□□ 1.58
DEPDC4Q8N2C3 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC24.92■■□□□ 1.58
DEPDC4Q8N2C3 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC24.92■■□□□ 1.58
DEPDC4Q8N2C3 SHF-206ENST00000560471 2499 ntTSL 5 BASIC24.89■■□□□ 1.57
DEPDC4Q8N2C3 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.57
DEPDC4Q8N2C3 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC24.88■■□□□ 1.57
DEPDC4Q8N2C3 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC24.88■■□□□ 1.57
DEPDC4Q8N2C3 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC24.88■■□□□ 1.57
DEPDC4Q8N2C3 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC24.88■■□□□ 1.57
DEPDC4Q8N2C3 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC24.88■■□□□ 1.57
DEPDC4Q8N2C3 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
DEPDC4Q8N2C3 AL031258.1-201ENST00000623562 325 ntBASIC24.87■■□□□ 1.57
DEPDC4Q8N2C3 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
DEPDC4Q8N2C3 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
DEPDC4Q8N2C3 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
DEPDC4Q8N2C3 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC24.85■■□□□ 1.57
DEPDC4Q8N2C3 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
DEPDC4Q8N2C3 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC24.84■■□□□ 1.57
DEPDC4Q8N2C3 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC24.84■■□□□ 1.57
DEPDC4Q8N2C3 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC24.82■■□□□ 1.56
DEPDC4Q8N2C3 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
DEPDC4Q8N2C3 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC24.81■■□□□ 1.56
DEPDC4Q8N2C3 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC24.8■■□□□ 1.56
DEPDC4Q8N2C3 AL161658.1-201ENST00000623641 1967 ntBASIC24.8■■□□□ 1.56
DEPDC4Q8N2C3 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC24.79■■□□□ 1.56
DEPDC4Q8N2C3 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC24.78■■□□□ 1.56
DEPDC4Q8N2C3 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC24.78■■□□□ 1.56
DEPDC4Q8N2C3 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
DEPDC4Q8N2C3 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC24.78■■□□□ 1.56
DEPDC4Q8N2C3 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
DEPDC4Q8N2C3 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
DEPDC4Q8N2C3 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC24.76■■□□□ 1.55
DEPDC4Q8N2C3 AC139426.1-201ENST00000568218 2529 ntBASIC24.75■■□□□ 1.55
DEPDC4Q8N2C3 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC24.74■■□□□ 1.55
DEPDC4Q8N2C3 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC24.74■■□□□ 1.55
DEPDC4Q8N2C3 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
DEPDC4Q8N2C3 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC24.73■■□□□ 1.55
DEPDC4Q8N2C3 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
DEPDC4Q8N2C3 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC24.71■■□□□ 1.55
DEPDC4Q8N2C3 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC24.71■■□□□ 1.55
DEPDC4Q8N2C3 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
DEPDC4Q8N2C3 EBPL-203ENST00000378270 579 ntTSL 2 BASIC24.7■■□□□ 1.54
DEPDC4Q8N2C3 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC24.69■■□□□ 1.54
DEPDC4Q8N2C3 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC24.69■■□□□ 1.54
DEPDC4Q8N2C3 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC24.68■■□□□ 1.54
DEPDC4Q8N2C3 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
DEPDC4Q8N2C3 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC24.67■■□□□ 1.54
DEPDC4Q8N2C3 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC24.67■■□□□ 1.54
DEPDC4Q8N2C3 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
DEPDC4Q8N2C3 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC24.66■■□□□ 1.54
DEPDC4Q8N2C3 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
DEPDC4Q8N2C3 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
DEPDC4Q8N2C3 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
DEPDC4Q8N2C3 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC24.65■■□□□ 1.54
DEPDC4Q8N2C3 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC24.65■■□□□ 1.54
DEPDC4Q8N2C3 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
DEPDC4Q8N2C3 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
DEPDC4Q8N2C3 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
DEPDC4Q8N2C3 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC24.61■■□□□ 1.53
DEPDC4Q8N2C3 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
DEPDC4Q8N2C3 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
DEPDC4Q8N2C3 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC24.6■■□□□ 1.53
DEPDC4Q8N2C3 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
DEPDC4Q8N2C3 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC24.6■■□□□ 1.53
DEPDC4Q8N2C3 MVK-208ENST00000539696 608 ntTSL 5 BASIC24.59■■□□□ 1.53
DEPDC4Q8N2C3 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC24.58■■□□□ 1.53
DEPDC4Q8N2C3 ST7-AS1-201ENST00000456775 1889 ntBASIC24.58■■□□□ 1.52
DEPDC4Q8N2C3 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
DEPDC4Q8N2C3 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
DEPDC4Q8N2C3 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC24.57■■□□□ 1.52
DEPDC4Q8N2C3 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC24.57■■□□□ 1.52
DEPDC4Q8N2C3 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC24.57■■□□□ 1.52
Retrieved 100 of 98,524 protein–RNA pairs in 9.9 ms