Protein–RNA interactions for Protein: Q86X40

LRRC28, Leucine-rich repeat-containing protein 28, humanhuman

Predicted RBP Predictions only

Length 367 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28Q86X40 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC24■■□□□ 1.43
LRRC28Q86X40 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC23.99■■□□□ 1.43
LRRC28Q86X40 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
LRRC28Q86X40 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC23.98■■□□□ 1.43
LRRC28Q86X40 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC23.98■■□□□ 1.43
LRRC28Q86X40 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC23.97■■□□□ 1.43
LRRC28Q86X40 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
LRRC28Q86X40 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC23.96■■□□□ 1.43
LRRC28Q86X40 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC23.95■■□□□ 1.42
LRRC28Q86X40 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
LRRC28Q86X40 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
LRRC28Q86X40 AC120057.4-201ENST00000624722 1615 ntBASIC23.94■■□□□ 1.42
LRRC28Q86X40 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC23.94■■□□□ 1.42
LRRC28Q86X40 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC23.94■■□□□ 1.42
LRRC28Q86X40 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
LRRC28Q86X40 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC23.93■■□□□ 1.42
LRRC28Q86X40 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
LRRC28Q86X40 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
LRRC28Q86X40 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
LRRC28Q86X40 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
LRRC28Q86X40 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC23.91■■□□□ 1.42
LRRC28Q86X40 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC23.9■■□□□ 1.42
LRRC28Q86X40 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
LRRC28Q86X40 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
LRRC28Q86X40 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC23.88■■□□□ 1.41
LRRC28Q86X40 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC23.87■■□□□ 1.41
LRRC28Q86X40 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC23.87■■□□□ 1.41
LRRC28Q86X40 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
LRRC28Q86X40 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
LRRC28Q86X40 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC23.84■■□□□ 1.41
LRRC28Q86X40 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
LRRC28Q86X40 AC139426.1-201ENST00000568218 2529 ntBASIC23.84■■□□□ 1.41
LRRC28Q86X40 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC23.83■■□□□ 1.41
LRRC28Q86X40 EBPL-203ENST00000378270 579 ntTSL 2 BASIC23.83■■□□□ 1.41
LRRC28Q86X40 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
LRRC28Q86X40 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC23.82■■□□□ 1.4
LRRC28Q86X40 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
LRRC28Q86X40 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC23.81■■□□□ 1.4
LRRC28Q86X40 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC23.8■■□□□ 1.4
LRRC28Q86X40 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC23.8■■□□□ 1.4
LRRC28Q86X40 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC23.79■■□□□ 1.4
LRRC28Q86X40 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
LRRC28Q86X40 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC23.79■■□□□ 1.4
LRRC28Q86X40 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC23.78■■□□□ 1.4
LRRC28Q86X40 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC23.78■■□□□ 1.4
LRRC28Q86X40 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC23.77■■□□□ 1.4
LRRC28Q86X40 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
LRRC28Q86X40 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC23.76■■□□□ 1.39
LRRC28Q86X40 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC23.76■■□□□ 1.39
LRRC28Q86X40 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC23.76■■□□□ 1.39
LRRC28Q86X40 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC23.75■■□□□ 1.39
LRRC28Q86X40 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
LRRC28Q86X40 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC23.74■■□□□ 1.39
LRRC28Q86X40 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC23.74■■□□□ 1.39
LRRC28Q86X40 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC23.73■■□□□ 1.39
LRRC28Q86X40 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
LRRC28Q86X40 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC23.72■■□□□ 1.39
LRRC28Q86X40 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC23.72■■□□□ 1.39
LRRC28Q86X40 MVK-208ENST00000539696 608 ntTSL 5 BASIC23.72■■□□□ 1.39
LRRC28Q86X40 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC23.72■■□□□ 1.39
LRRC28Q86X40 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
LRRC28Q86X40 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC23.7■■□□□ 1.38
LRRC28Q86X40 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC23.7■■□□□ 1.38
LRRC28Q86X40 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC23.69■■□□□ 1.38
LRRC28Q86X40 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
LRRC28Q86X40 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC23.69■■□□□ 1.38
LRRC28Q86X40 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC23.69■■□□□ 1.38
LRRC28Q86X40 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC23.67■■□□□ 1.38
LRRC28Q86X40 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
LRRC28Q86X40 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
LRRC28Q86X40 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC23.67■■□□□ 1.38
LRRC28Q86X40 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC23.66■■□□□ 1.38
LRRC28Q86X40 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
LRRC28Q86X40 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
LRRC28Q86X40 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
LRRC28Q86X40 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC23.62■■□□□ 1.37
LRRC28Q86X40 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC23.62■■□□□ 1.37
LRRC28Q86X40 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
LRRC28Q86X40 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC23.62■■□□□ 1.37
LRRC28Q86X40 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC23.61■■□□□ 1.37
LRRC28Q86X40 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC23.61■■□□□ 1.37
LRRC28Q86X40 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
LRRC28Q86X40 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
LRRC28Q86X40 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC23.59■■□□□ 1.37
LRRC28Q86X40 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
LRRC28Q86X40 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
LRRC28Q86X40 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
LRRC28Q86X40 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC23.58■■□□□ 1.36
LRRC28Q86X40 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC23.57■■□□□ 1.36
LRRC28Q86X40 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC23.56■■□□□ 1.36
LRRC28Q86X40 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC23.56■■□□□ 1.36
LRRC28Q86X40 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
LRRC28Q86X40 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC23.55■■□□□ 1.36
LRRC28Q86X40 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
LRRC28Q86X40 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC23.54■■□□□ 1.36
LRRC28Q86X40 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
LRRC28Q86X40 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC23.53■■□□□ 1.36
LRRC28Q86X40 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
LRRC28Q86X40 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
LRRC28Q86X40 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC23.52■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 9.2 ms