Protein–RNA interactions for Protein: Q6ISU1

PTCRA, Pre T-cell antigen receptor alpha, humanhuman

Predicted RBP Predictions only

Length 281 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCRAQ6ISU1 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC29.02■■■□□ 2.24
PTCRAQ6ISU1 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC29.02■■■□□ 2.24
PTCRAQ6ISU1 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC28.99■■■□□ 2.23
PTCRAQ6ISU1 HSD17B1P1-201ENST00000590052 955 ntBASIC28.98■■■□□ 2.23
PTCRAQ6ISU1 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC28.97■■■□□ 2.23
PTCRAQ6ISU1 MACF1-219ENST00000484793 834 ntTSL 2 BASIC28.97■■■□□ 2.23
PTCRAQ6ISU1 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC28.96■■■□□ 2.23
PTCRAQ6ISU1 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC28.96■■■□□ 2.23
PTCRAQ6ISU1 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC28.96■■■□□ 2.23
PTCRAQ6ISU1 CALM3-209ENST00000597743 577 ntTSL 4 BASIC28.96■■■□□ 2.23
PTCRAQ6ISU1 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC28.95■■■□□ 2.23
PTCRAQ6ISU1 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC28.95■■■□□ 2.23
PTCRAQ6ISU1 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC28.95■■■□□ 2.22
PTCRAQ6ISU1 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC28.95■■■□□ 2.22
PTCRAQ6ISU1 RPS2-209ENST00000529806 993 ntTSL 3 BASIC28.94■■■□□ 2.22
PTCRAQ6ISU1 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC28.92■■■□□ 2.22
PTCRAQ6ISU1 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC28.91■■■□□ 2.22
PTCRAQ6ISU1 BRD4-212ENST00000630599 726 ntTSL 2 BASIC28.9■■■□□ 2.22
PTCRAQ6ISU1 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC28.89■■■□□ 2.22
PTCRAQ6ISU1 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC28.88■■■□□ 2.21
PTCRAQ6ISU1 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC28.88■■■□□ 2.21
PTCRAQ6ISU1 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC28.87■■■□□ 2.21
PTCRAQ6ISU1 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC28.87■■■□□ 2.21
PTCRAQ6ISU1 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC28.86■■■□□ 2.21
PTCRAQ6ISU1 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC28.86■■■□□ 2.21
PTCRAQ6ISU1 AC021231.2-201ENST00000594613 730 ntBASIC28.85■■■□□ 2.21
PTCRAQ6ISU1 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC28.85■■■□□ 2.21
PTCRAQ6ISU1 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC28.84■■■□□ 2.21
PTCRAQ6ISU1 AC016575.1-201ENST00000607026 382 ntBASIC28.84■■■□□ 2.21
PTCRAQ6ISU1 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC28.83■■■□□ 2.21
PTCRAQ6ISU1 RNF166-209ENST00000567844 633 ntTSL 5 BASIC28.82■■■□□ 2.2
PTCRAQ6ISU1 MIR3648-2-201ENST00000581792 180 ntBASIC28.82■■■□□ 2.2
PTCRAQ6ISU1 MIR3648-1-201ENST00000615959 180 ntBASIC28.82■■■□□ 2.2
PTCRAQ6ISU1 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC28.81■■■□□ 2.2
PTCRAQ6ISU1 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC28.81■■■□□ 2.2
PTCRAQ6ISU1 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC28.8■■■□□ 2.2
PTCRAQ6ISU1 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
PTCRAQ6ISU1 GDI1-215ENST00000630693 786 ntTSL 4 BASIC28.8■■■□□ 2.2
PTCRAQ6ISU1 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC28.79■■■□□ 2.2
PTCRAQ6ISU1 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC28.78■■■□□ 2.2
PTCRAQ6ISU1 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC28.77■■■□□ 2.2
PTCRAQ6ISU1 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
PTCRAQ6ISU1 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC28.77■■■□□ 2.2
PTCRAQ6ISU1 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC28.75■■■□□ 2.19
PTCRAQ6ISU1 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC28.75■■■□□ 2.19
PTCRAQ6ISU1 WASH5P-204ENST00000632292 975 ntBASIC28.75■■■□□ 2.19
PTCRAQ6ISU1 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
PTCRAQ6ISU1 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC28.74■■■□□ 2.19
PTCRAQ6ISU1 CIB2-204ENST00000557846 934 ntTSL 3 BASIC28.74■■■□□ 2.19
PTCRAQ6ISU1 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC28.73■■■□□ 2.19
PTCRAQ6ISU1 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC28.71■■■□□ 2.19
PTCRAQ6ISU1 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
PTCRAQ6ISU1 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC28.71■■■□□ 2.19
PTCRAQ6ISU1 ABHD17AP3-201ENST00000503096 1137 ntBASIC28.7■■■□□ 2.18
PTCRAQ6ISU1 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.18
PTCRAQ6ISU1 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC28.67■■■□□ 2.18
PTCRAQ6ISU1 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
PTCRAQ6ISU1 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC28.66■■■□□ 2.18
PTCRAQ6ISU1 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC28.65■■■□□ 2.18
PTCRAQ6ISU1 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC28.64■■■□□ 2.18
PTCRAQ6ISU1 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC28.64■■■□□ 2.17
PTCRAQ6ISU1 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC28.63■■■□□ 2.17
PTCRAQ6ISU1 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
PTCRAQ6ISU1 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC28.63■■■□□ 2.17
PTCRAQ6ISU1 AGPS-202ENST00000409888 815 ntTSL 4 BASIC28.63■■■□□ 2.17
PTCRAQ6ISU1 CR559946.2-201ENST00000623684 991 ntBASIC28.62■■■□□ 2.17
PTCRAQ6ISU1 DUX4L11-201ENST00000611504 1267 ntBASIC28.61■■■□□ 2.17
PTCRAQ6ISU1 DUX4L12-201ENST00000614593 1267 ntBASIC28.61■■■□□ 2.17
PTCRAQ6ISU1 DUX4L14-201ENST00000621227 1267 ntBASIC28.61■■■□□ 2.17
PTCRAQ6ISU1 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
PTCRAQ6ISU1 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
PTCRAQ6ISU1 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC28.59■■■□□ 2.17
PTCRAQ6ISU1 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC28.59■■■□□ 2.17
PTCRAQ6ISU1 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC28.59■■■□□ 2.17
PTCRAQ6ISU1 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
PTCRAQ6ISU1 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC28.56■■■□□ 2.16
PTCRAQ6ISU1 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC28.56■■■□□ 2.16
PTCRAQ6ISU1 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC28.55■■■□□ 2.16
PTCRAQ6ISU1 LINC01971-201ENST00000617888 1048 ntBASIC28.55■■■□□ 2.16
PTCRAQ6ISU1 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC28.55■■■□□ 2.16
PTCRAQ6ISU1 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
PTCRAQ6ISU1 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC28.54■■■□□ 2.16
PTCRAQ6ISU1 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC28.54■■■□□ 2.16
PTCRAQ6ISU1 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC28.54■■■□□ 2.16
PTCRAQ6ISU1 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC28.53■■■□□ 2.16
PTCRAQ6ISU1 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC28.53■■■□□ 2.16
PTCRAQ6ISU1 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC28.53■■■□□ 2.16
PTCRAQ6ISU1 AC108673.1-201ENST00000510422 1159 ntBASIC28.52■■■□□ 2.16
PTCRAQ6ISU1 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC28.52■■■□□ 2.16
PTCRAQ6ISU1 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
PTCRAQ6ISU1 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC28.5■■■□□ 2.15
PTCRAQ6ISU1 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC28.49■■■□□ 2.15
PTCRAQ6ISU1 MIR6090-201ENST00000622481 60 ntBASIC28.49■■■□□ 2.15
PTCRAQ6ISU1 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC28.48■■■□□ 2.15
PTCRAQ6ISU1 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC28.48■■■□□ 2.15
PTCRAQ6ISU1 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC28.48■■■□□ 2.15
PTCRAQ6ISU1 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC28.47■■■□□ 2.15
PTCRAQ6ISU1 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC28.46■■■□□ 2.15
PTCRAQ6ISU1 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
PTCRAQ6ISU1 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC28.46■■■□□ 2.15
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms