Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC32■■■□□ 2.71
HMGCS2P54868 PVT1-219ENST00000523427 938 ntTSL 3 BASIC32■■■□□ 2.71
HMGCS2P54868 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC31.96■■■□□ 2.71
HMGCS2P54868 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC31.96■■■□□ 2.71
HMGCS2P54868 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC31.96■■■□□ 2.71
HMGCS2P54868 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC31.96■■■□□ 2.71
HMGCS2P54868 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC31.94■■■□□ 2.7
HMGCS2P54868 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC31.91■■■□□ 2.7
HMGCS2P54868 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
HMGCS2P54868 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
HMGCS2P54868 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
HMGCS2P54868 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
HMGCS2P54868 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC31.89■■■□□ 2.7
HMGCS2P54868 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC31.89■■■□□ 2.7
HMGCS2P54868 BOD1-206ENST00000480951 814 ntTSL 2 BASIC31.89■■■□□ 2.7
HMGCS2P54868 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC31.89■■■□□ 2.7
HMGCS2P54868 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC31.89■■■□□ 2.7
HMGCS2P54868 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC31.86■■■□□ 2.69
HMGCS2P54868 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC31.86■■■□□ 2.69
HMGCS2P54868 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC31.86■■■□□ 2.69
HMGCS2P54868 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
HMGCS2P54868 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC31.85■■■□□ 2.69
HMGCS2P54868 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC31.85■■■□□ 2.69
HMGCS2P54868 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC31.85■■■□□ 2.69
HMGCS2P54868 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
HMGCS2P54868 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
HMGCS2P54868 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC31.83■■■□□ 2.69
HMGCS2P54868 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
HMGCS2P54868 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC31.81■■■□□ 2.68
HMGCS2P54868 RPS2-209ENST00000529806 993 ntTSL 3 BASIC31.8■■■□□ 2.68
HMGCS2P54868 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC31.8■■■□□ 2.68
HMGCS2P54868 ZNRF2P2-203ENST00000454624 420 ntBASIC31.79■■■□□ 2.68
HMGCS2P54868 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
HMGCS2P54868 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
HMGCS2P54868 HLA-V-202ENST00000446817 847 ntBASIC31.78■■■□□ 2.68
HMGCS2P54868 MBP-237ENST00000579129 1052 ntTSL 5 BASIC31.78■■■□□ 2.68
HMGCS2P54868 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC31.77■■■□□ 2.68
HMGCS2P54868 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC31.77■■■□□ 2.68
HMGCS2P54868 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC31.77■■■□□ 2.68
HMGCS2P54868 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC31.76■■■□□ 2.67
HMGCS2P54868 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC31.76■■■□□ 2.67
HMGCS2P54868 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
HMGCS2P54868 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
HMGCS2P54868 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
HMGCS2P54868 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC31.74■■■□□ 2.67
HMGCS2P54868 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC31.73■■■□□ 2.67
HMGCS2P54868 HGH1-207ENST00000628266 258 ntTSL 5 BASIC31.73■■■□□ 2.67
HMGCS2P54868 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC31.73■■■□□ 2.67
HMGCS2P54868 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC31.72■■■□□ 2.67
HMGCS2P54868 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC31.72■■■□□ 2.67
HMGCS2P54868 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
HMGCS2P54868 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC31.71■■■□□ 2.67
HMGCS2P54868 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC31.7■■■□□ 2.67
HMGCS2P54868 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
HMGCS2P54868 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC31.69■■■□□ 2.66
HMGCS2P54868 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
HMGCS2P54868 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC31.68■■■□□ 2.66
HMGCS2P54868 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC31.68■■■□□ 2.66
HMGCS2P54868 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC31.67■■■□□ 2.66
HMGCS2P54868 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC31.67■■■□□ 2.66
HMGCS2P54868 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC31.66■■■□□ 2.66
HMGCS2P54868 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC31.66■■■□□ 2.66
HMGCS2P54868 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
HMGCS2P54868 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC31.65■■■□□ 2.66
HMGCS2P54868 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC31.64■■■□□ 2.66
HMGCS2P54868 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC31.64■■■□□ 2.66
HMGCS2P54868 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC31.63■■■□□ 2.65
HMGCS2P54868 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC31.63■■■□□ 2.65
HMGCS2P54868 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC31.62■■■□□ 2.65
HMGCS2P54868 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
HMGCS2P54868 DUX4L29-201ENST00000425409 679 ntBASIC31.6■■■□□ 2.65
HMGCS2P54868 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC31.6■■■□□ 2.65
HMGCS2P54868 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC31.59■■■□□ 2.65
HMGCS2P54868 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC31.58■■■□□ 2.65
HMGCS2P54868 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC31.58■■■□□ 2.65
HMGCS2P54868 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC31.57■■■□□ 2.64
HMGCS2P54868 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC31.56■■■□□ 2.64
HMGCS2P54868 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
HMGCS2P54868 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC31.53■■■□□ 2.64
HMGCS2P54868 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
HMGCS2P54868 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
HMGCS2P54868 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC31.52■■■□□ 2.64
HMGCS2P54868 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC31.51■■■□□ 2.63
HMGCS2P54868 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC31.51■■■□□ 2.63
HMGCS2P54868 AC021231.2-201ENST00000594613 730 ntBASIC31.51■■■□□ 2.63
HMGCS2P54868 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC31.5■■■□□ 2.63
HMGCS2P54868 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC31.49■■■□□ 2.63
HMGCS2P54868 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC31.49■■■□□ 2.63
HMGCS2P54868 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
HMGCS2P54868 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC31.48■■■□□ 2.63
HMGCS2P54868 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC31.48■■■□□ 2.63
HMGCS2P54868 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC31.48■■■□□ 2.63
HMGCS2P54868 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
HMGCS2P54868 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC31.47■■■□□ 2.63
HMGCS2P54868 CIB2-204ENST00000557846 934 ntTSL 3 BASIC31.47■■■□□ 2.63
HMGCS2P54868 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
HMGCS2P54868 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC31.46■■■□□ 2.63
HMGCS2P54868 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC31.45■■■□□ 2.63
HMGCS2P54868 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC31.44■■■□□ 2.62
HMGCS2P54868 MIR6090-201ENST00000622481 60 ntBASIC31.44■■■□□ 2.62
Retrieved 100 of 98,524 protein–RNA pairs in 17.6 ms