Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 MIR639-201ENST00000384974 98 ntBASIC38.95■■■■□ 3.83
MSH6P52701 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC38.95■■■■□ 3.83
MSH6P52701 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC38.91■■■■□ 3.82
MSH6P52701 MACF1-219ENST00000484793 834 ntTSL 2 BASIC38.9■■■■□ 3.82
MSH6P52701 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC38.89■■■■□ 3.82
MSH6P52701 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC38.87■■■■□ 3.81
MSH6P52701 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC38.87■■■■□ 3.81
MSH6P52701 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC38.87■■■■□ 3.81
MSH6P52701 DUX4L29-201ENST00000425409 679 ntBASIC38.87■■■■□ 3.81
MSH6P52701 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC38.87■■■■□ 3.81
MSH6P52701 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC38.84■■■■□ 3.81
MSH6P52701 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC38.82■■■■□ 3.81
MSH6P52701 RPS2-209ENST00000529806 993 ntTSL 3 BASIC38.82■■■■□ 3.8
MSH6P52701 HSD17B1P1-201ENST00000590052 955 ntBASIC38.82■■■■□ 3.8
MSH6P52701 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC38.81■■■■□ 3.8
MSH6P52701 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC38.79■■■■□ 3.8
MSH6P52701 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC38.79■■■■□ 3.8
MSH6P52701 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC38.78■■■■□ 3.8
MSH6P52701 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC38.77■■■■□ 3.8
MSH6P52701 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC38.77■■■■□ 3.8
MSH6P52701 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC38.77■■■■□ 3.8
MSH6P52701 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC38.75■■■■□ 3.79
MSH6P52701 CALM3-209ENST00000597743 577 ntTSL 4 BASIC38.73■■■■□ 3.79
MSH6P52701 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC38.73■■■■□ 3.79
MSH6P52701 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC38.71■■■■□ 3.79
MSH6P52701 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC38.7■■■■□ 3.79
MSH6P52701 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC38.7■■■■□ 3.78
MSH6P52701 BRD4-212ENST00000630599 726 ntTSL 2 BASIC38.68■■■■□ 3.78
MSH6P52701 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC38.68■■■■□ 3.78
MSH6P52701 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC38.67■■■■□ 3.78
MSH6P52701 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC38.67■■■■□ 3.78
MSH6P52701 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC38.66■■■■□ 3.78
MSH6P52701 AC021231.2-201ENST00000594613 730 ntBASIC38.66■■■■□ 3.78
MSH6P52701 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC38.63■■■■□ 3.77
MSH6P52701 RNF166-209ENST00000567844 633 ntTSL 5 BASIC38.63■■■■□ 3.77
MSH6P52701 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC38.62■■■■□ 3.77
MSH6P52701 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC38.62■■■■□ 3.77
MSH6P52701 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC38.62■■■■□ 3.77
MSH6P52701 AC016575.1-201ENST00000607026 382 ntBASIC38.62■■■■□ 3.77
MSH6P52701 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC38.61■■■■□ 3.77
MSH6P52701 MIR3648-2-201ENST00000581792 180 ntBASIC38.61■■■■□ 3.77
MSH6P52701 MIR3648-1-201ENST00000615959 180 ntBASIC38.61■■■■□ 3.77
MSH6P52701 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC38.6■■■■□ 3.77
MSH6P52701 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC38.6■■■■□ 3.77
MSH6P52701 WASH5P-204ENST00000632292 975 ntBASIC38.6■■■■□ 3.77
MSH6P52701 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC38.58■■■■□ 3.77
MSH6P52701 GDI1-215ENST00000630693 786 ntTSL 4 BASIC38.58■■■■□ 3.77
MSH6P52701 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC38.57■■■■□ 3.77
MSH6P52701 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC38.57■■■■□ 3.77
MSH6P52701 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC38.56■■■■□ 3.76
MSH6P52701 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC38.56■■■■□ 3.76
MSH6P52701 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC38.55■■■■□ 3.76
MSH6P52701 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC38.55■■■■□ 3.76
MSH6P52701 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC38.51■■■■□ 3.76
MSH6P52701 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC38.5■■■■□ 3.75
MSH6P52701 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC38.49■■■■□ 3.75
MSH6P52701 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC38.46■■■■□ 3.75
MSH6P52701 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC38.46■■■■□ 3.75
MSH6P52701 CIB2-204ENST00000557846 934 ntTSL 3 BASIC38.44■■■■□ 3.74
MSH6P52701 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC38.44■■■■□ 3.74
MSH6P52701 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC38.44■■■■□ 3.74
MSH6P52701 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC38.43■■■■□ 3.74
MSH6P52701 CR559946.2-201ENST00000623684 991 ntBASIC38.43■■■■□ 3.74
MSH6P52701 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC38.43■■■■□ 3.74
MSH6P52701 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC38.42■■■■□ 3.74
MSH6P52701 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC38.4■■■■□ 3.74
MSH6P52701 AGPS-202ENST00000409888 815 ntTSL 4 BASIC38.38■■■■□ 3.73
MSH6P52701 ABHD17AP3-201ENST00000503096 1137 ntBASIC38.38■■■■□ 3.73
MSH6P52701 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC38.36■■■■□ 3.73
MSH6P52701 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC38.36■■■■□ 3.73
MSH6P52701 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC38.35■■■■□ 3.73
MSH6P52701 DUX4L11-201ENST00000611504 1267 ntBASIC38.33■■■■□ 3.73
MSH6P52701 DUX4L12-201ENST00000614593 1267 ntBASIC38.33■■■■□ 3.73
MSH6P52701 DUX4L14-201ENST00000621227 1267 ntBASIC38.33■■■■□ 3.73
MSH6P52701 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC38.31■■■■□ 3.72
MSH6P52701 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC38.31■■■■□ 3.72
MSH6P52701 LINC01971-201ENST00000617888 1048 ntBASIC38.31■■■■□ 3.72
MSH6P52701 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC38.3■■■■□ 3.72
MSH6P52701 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC38.3■■■■□ 3.72
MSH6P52701 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC38.28■■■■□ 3.72
MSH6P52701 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC38.27■■■■□ 3.72
MSH6P52701 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC38.27■■■■□ 3.72
MSH6P52701 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC38.27■■■■□ 3.72
MSH6P52701 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC38.27■■■■□ 3.72
MSH6P52701 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC38.26■■■■□ 3.72
MSH6P52701 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC38.26■■■■□ 3.72
MSH6P52701 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC38.26■■■■□ 3.72
MSH6P52701 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC38.25■■■■□ 3.71
MSH6P52701 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC38.24■■■■□ 3.71
MSH6P52701 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC38.23■■■■□ 3.71
MSH6P52701 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC38.23■■■■□ 3.71
MSH6P52701 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC38.23■■■■□ 3.71
MSH6P52701 AC108673.1-201ENST00000510422 1159 ntBASIC38.22■■■■□ 3.71
MSH6P52701 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC38.22■■■■□ 3.71
MSH6P52701 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC38.22■■■■□ 3.71
MSH6P52701 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC38.21■■■■□ 3.71
MSH6P52701 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC38.21■■■■□ 3.71
MSH6P52701 MIR6090-201ENST00000622481 60 ntBASIC38.2■■■■□ 3.71
MSH6P52701 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC38.19■■■■□ 3.7
MSH6P52701 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC38.18■■■■□ 3.7
Retrieved 100 of 98,524 protein–RNA pairs in 168 ms