Protein–RNA interactions for Protein: P19338

NCL, Nucleolin, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NCLP19338 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC31.83■■■□□ 2.69
NCLP19338 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC31.82■■■□□ 2.69
NCLP19338 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC31.82■■■□□ 2.68
NCLP19338 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
NCLP19338 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
NCLP19338 DYNLL1-208ENST00000550178 581 ntBASIC31.81■■■□□ 2.68
NCLP19338 SHF-206ENST00000560471 2499 ntTSL 5 BASIC31.8■■■□□ 2.68
NCLP19338 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC31.8■■■□□ 2.68
NCLP19338 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
NCLP19338 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
NCLP19338 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC31.8■■■□□ 2.68
NCLP19338 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
NCLP19338 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
NCLP19338 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
NCLP19338 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
NCLP19338 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC31.78■■■□□ 2.68
NCLP19338 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC31.78■■■□□ 2.68
NCLP19338 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
NCLP19338 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
NCLP19338 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC31.77■■■□□ 2.68
NCLP19338 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC31.77■■■□□ 2.68
NCLP19338 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC31.76■■■□□ 2.68
NCLP19338 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC31.75■■■□□ 2.67
NCLP19338 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC31.75■■■□□ 2.67
NCLP19338 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
NCLP19338 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
NCLP19338 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC31.74■■■□□ 2.67
NCLP19338 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC31.73■■■□□ 2.67
NCLP19338 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC31.73■■■□□ 2.67
NCLP19338 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC31.72■■■□□ 2.67
NCLP19338 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC31.72■■■□□ 2.67
NCLP19338 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC31.72■■■□□ 2.67
NCLP19338 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
NCLP19338 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC31.69■■■□□ 2.66
NCLP19338 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
NCLP19338 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC31.68■■■□□ 2.66
NCLP19338 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC31.68■■■□□ 2.66
NCLP19338 MVK-208ENST00000539696 608 ntTSL 5 BASIC31.68■■■□□ 2.66
NCLP19338 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC31.68■■■□□ 2.66
NCLP19338 AC139426.1-201ENST00000568218 2529 ntBASIC31.68■■■□□ 2.66
NCLP19338 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
NCLP19338 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
NCLP19338 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC31.65■■■□□ 2.66
NCLP19338 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
NCLP19338 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC31.63■■■□□ 2.65
NCLP19338 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC31.63■■■□□ 2.65
NCLP19338 AL031258.1-201ENST00000623562 325 ntBASIC31.61■■■□□ 2.65
NCLP19338 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC31.6■■■□□ 2.65
NCLP19338 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
NCLP19338 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC31.58■■■□□ 2.65
NCLP19338 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC31.57■■■□□ 2.64
NCLP19338 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC31.57■■■□□ 2.64
NCLP19338 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC31.56■■■□□ 2.64
NCLP19338 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC31.55■■■□□ 2.64
NCLP19338 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC31.55■■■□□ 2.64
NCLP19338 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC31.55■■■□□ 2.64
NCLP19338 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC31.54■■■□□ 2.64
NCLP19338 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
NCLP19338 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
NCLP19338 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC31.52■■■□□ 2.64
NCLP19338 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC31.52■■■□□ 2.64
NCLP19338 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
NCLP19338 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC31.49■■■□□ 2.63
NCLP19338 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC31.47■■■□□ 2.63
NCLP19338 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
NCLP19338 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC31.47■■■□□ 2.63
NCLP19338 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.63
NCLP19338 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.63
NCLP19338 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC31.45■■■□□ 2.62
NCLP19338 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC31.44■■■□□ 2.62
NCLP19338 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC31.44■■■□□ 2.62
NCLP19338 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC31.44■■■□□ 2.62
NCLP19338 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC31.43■■■□□ 2.62
NCLP19338 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
NCLP19338 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
NCLP19338 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC31.41■■■□□ 2.62
NCLP19338 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC31.39■■■□□ 2.62
NCLP19338 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
NCLP19338 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
NCLP19338 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
NCLP19338 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC31.37■■■□□ 2.61
NCLP19338 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
NCLP19338 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC31.37■■■□□ 2.61
NCLP19338 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC31.37■■■□□ 2.61
NCLP19338 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC31.36■■■□□ 2.61
NCLP19338 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
NCLP19338 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
NCLP19338 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC31.34■■■□□ 2.61
NCLP19338 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC31.34■■■□□ 2.61
NCLP19338 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC31.34■■■□□ 2.61
NCLP19338 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
NCLP19338 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC31.33■■■□□ 2.61
NCLP19338 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC31.33■■■□□ 2.61
NCLP19338 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC31.33■■■□□ 2.61
NCLP19338 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC31.31■■■□□ 2.6
NCLP19338 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
NCLP19338 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC31.29■■■□□ 2.6
NCLP19338 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC31.29■■■□□ 2.6
NCLP19338 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC31.29■■■□□ 2.6
NCLP19338 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
Retrieved 100 of 98,524 protein–RNA pairs in 132.8 ms