Protein–RNA interactions for Protein: A0A0B4J249

TRAV5, T-cell receptor alpha variable 5 (Fragment), humanhuman

Predictions only

Length 113 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV5A0A0B4J249 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
TRAV5A0A0B4J249 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
TRAV5A0A0B4J249 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
TRAV5A0A0B4J249 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
TRAV5A0A0B4J249 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
TRAV5A0A0B4J249 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
TRAV5A0A0B4J249 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
TRAV5A0A0B4J249 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
TRAV5A0A0B4J249 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
TRAV5A0A0B4J249 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
TRAV5A0A0B4J249 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRAV5A0A0B4J249 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC20.98■□□□□ 0.95
TRAV5A0A0B4J249 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRAV5A0A0B4J249 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TRAV5A0A0B4J249 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
TRAV5A0A0B4J249 AC006077.2-201ENST00000623591 457 ntBASIC20.97■□□□□ 0.95
TRAV5A0A0B4J249 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TRAV5A0A0B4J249 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRAV5A0A0B4J249 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC20.96■□□□□ 0.95
TRAV5A0A0B4J249 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRAV5A0A0B4J249 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.95
TRAV5A0A0B4J249 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TRAV5A0A0B4J249 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
TRAV5A0A0B4J249 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
TRAV5A0A0B4J249 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC20.94■□□□□ 0.94
TRAV5A0A0B4J249 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC20.93■□□□□ 0.94
TRAV5A0A0B4J249 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
TRAV5A0A0B4J249 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TRAV5A0A0B4J249 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TRAV5A0A0B4J249 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC20.92■□□□□ 0.94
TRAV5A0A0B4J249 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TRAV5A0A0B4J249 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
TRAV5A0A0B4J249 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
TRAV5A0A0B4J249 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
TRAV5A0A0B4J249 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC20.89■□□□□ 0.94
TRAV5A0A0B4J249 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
TRAV5A0A0B4J249 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
TRAV5A0A0B4J249 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
TRAV5A0A0B4J249 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
TRAV5A0A0B4J249 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC20.88■□□□□ 0.93
TRAV5A0A0B4J249 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC20.88■□□□□ 0.93
TRAV5A0A0B4J249 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC20.88■□□□□ 0.93
TRAV5A0A0B4J249 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC20.87■□□□□ 0.93
TRAV5A0A0B4J249 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC20.87■□□□□ 0.93
TRAV5A0A0B4J249 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRAV5A0A0B4J249 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRAV5A0A0B4J249 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
TRAV5A0A0B4J249 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRAV5A0A0B4J249 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRAV5A0A0B4J249 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
TRAV5A0A0B4J249 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRAV5A0A0B4J249 AL161658.1-201ENST00000623641 1967 ntBASIC20.85■□□□□ 0.93
TRAV5A0A0B4J249 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TRAV5A0A0B4J249 ST7-AS1-201ENST00000456775 1889 ntBASIC20.84■□□□□ 0.93
TRAV5A0A0B4J249 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
TRAV5A0A0B4J249 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC20.82■□□□□ 0.92
TRAV5A0A0B4J249 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
TRAV5A0A0B4J249 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
TRAV5A0A0B4J249 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
TRAV5A0A0B4J249 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
TRAV5A0A0B4J249 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
TRAV5A0A0B4J249 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC20.81■□□□□ 0.92
TRAV5A0A0B4J249 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
TRAV5A0A0B4J249 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
TRAV5A0A0B4J249 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
TRAV5A0A0B4J249 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
TRAV5A0A0B4J249 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
TRAV5A0A0B4J249 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC20.78■□□□□ 0.92
TRAV5A0A0B4J249 ZNRF2P1-201ENST00000441407 443 ntBASIC20.77■□□□□ 0.92
TRAV5A0A0B4J249 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TRAV5A0A0B4J249 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TRAV5A0A0B4J249 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
TRAV5A0A0B4J249 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
TRAV5A0A0B4J249 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC20.74■□□□□ 0.91
TRAV5A0A0B4J249 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TRAV5A0A0B4J249 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TRAV5A0A0B4J249 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRAV5A0A0B4J249 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRAV5A0A0B4J249 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
TRAV5A0A0B4J249 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRAV5A0A0B4J249 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
TRAV5A0A0B4J249 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
TRAV5A0A0B4J249 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRAV5A0A0B4J249 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRAV5A0A0B4J249 DYNLL1-208ENST00000550178 581 ntBASIC20.72■□□□□ 0.91
TRAV5A0A0B4J249 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
TRAV5A0A0B4J249 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC20.71■□□□□ 0.91
TRAV5A0A0B4J249 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC20.7■□□□□ 0.91
TRAV5A0A0B4J249 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC20.7■□□□□ 0.9
TRAV5A0A0B4J249 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
TRAV5A0A0B4J249 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
TRAV5A0A0B4J249 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
TRAV5A0A0B4J249 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC20.68■□□□□ 0.9
TRAV5A0A0B4J249 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
TRAV5A0A0B4J249 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRAV5A0A0B4J249 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRAV5A0A0B4J249 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRAV5A0A0B4J249 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
TRAV5A0A0B4J249 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
TRAV5A0A0B4J249 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms