Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
FOXA3P55318 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
FOXA3P55318 TUB-203ENST00000534099 1759 ntTSL 2 BASIC16.23■□□□□ 0.19
FOXA3P55318 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC16.23■□□□□ 0.19
FOXA3P55318 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
FOXA3P55318 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
FOXA3P55318 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
FOXA3P55318 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
FOXA3P55318 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
FOXA3P55318 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
FOXA3P55318 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
FOXA3P55318 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
FOXA3P55318 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
FOXA3P55318 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
FOXA3P55318 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC16.22■□□□□ 0.19
FOXA3P55318 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
FOXA3P55318 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
FOXA3P55318 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
FOXA3P55318 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC16.22■□□□□ 0.19
FOXA3P55318 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
FOXA3P55318 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
FOXA3P55318 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC16.21■□□□□ 0.19
FOXA3P55318 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
FOXA3P55318 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
FOXA3P55318 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
FOXA3P55318 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
FOXA3P55318 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
FOXA3P55318 LONRF2P2-201ENST00000439212 571 ntBASIC16.21■□□□□ 0.19
FOXA3P55318 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
FOXA3P55318 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
FOXA3P55318 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC16.21■□□□□ 0.19
FOXA3P55318 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC16.21■□□□□ 0.19
FOXA3P55318 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.18
FOXA3P55318 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.18
FOXA3P55318 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC16.21■□□□□ 0.18
FOXA3P55318 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
FOXA3P55318 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC16.2■□□□□ 0.18
FOXA3P55318 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
FOXA3P55318 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
FOXA3P55318 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC16.2■□□□□ 0.18
FOXA3P55318 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
FOXA3P55318 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
FOXA3P55318 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
FOXA3P55318 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
FOXA3P55318 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
FOXA3P55318 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC16.2■□□□□ 0.18
FOXA3P55318 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
FOXA3P55318 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC16.19■□□□□ 0.18
FOXA3P55318 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
FOXA3P55318 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
FOXA3P55318 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC16.19■□□□□ 0.18
FOXA3P55318 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
FOXA3P55318 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
FOXA3P55318 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC16.19■□□□□ 0.18
FOXA3P55318 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
FOXA3P55318 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC16.19■□□□□ 0.18
FOXA3P55318 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
FOXA3P55318 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC16.19■□□□□ 0.18
FOXA3P55318 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
FOXA3P55318 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC16.19■□□□□ 0.18
FOXA3P55318 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC16.19■□□□□ 0.18
FOXA3P55318 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
FOXA3P55318 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC16.19■□□□□ 0.18
FOXA3P55318 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
FOXA3P55318 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC16.19■□□□□ 0.18
FOXA3P55318 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
FOXA3P55318 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
FOXA3P55318 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
FOXA3P55318 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
FOXA3P55318 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
FOXA3P55318 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC16.18■□□□□ 0.18
FOXA3P55318 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
FOXA3P55318 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
FOXA3P55318 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
FOXA3P55318 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC16.18■□□□□ 0.18
FOXA3P55318 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
FOXA3P55318 AL391422.3-201ENST00000603791 2761 ntBASIC16.18■□□□□ 0.18
FOXA3P55318 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
FOXA3P55318 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC16.18■□□□□ 0.18
FOXA3P55318 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
FOXA3P55318 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC16.18■□□□□ 0.18
FOXA3P55318 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC16.18■□□□□ 0.18
FOXA3P55318 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC16.18■□□□□ 0.18
FOXA3P55318 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC16.18■□□□□ 0.18
FOXA3P55318 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC16.18■□□□□ 0.18
FOXA3P55318 SPCS2P3-201ENST00000500401 656 ntBASIC16.18■□□□□ 0.18
FOXA3P55318 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
FOXA3P55318 USF2-207ENST00000595068 1612 ntTSL 5 BASIC16.18■□□□□ 0.18
FOXA3P55318 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
FOXA3P55318 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC16.18■□□□□ 0.18
FOXA3P55318 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
FOXA3P55318 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
FOXA3P55318 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
FOXA3P55318 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC16.17■□□□□ 0.18
FOXA3P55318 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
FOXA3P55318 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC16.17■□□□□ 0.18
FOXA3P55318 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
FOXA3P55318 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
FOXA3P55318 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC16.17■□□□□ 0.18
FOXA3P55318 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms