Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC23.19■■□□□ 1.3
CDX2Q99626 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
CDX2Q99626 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
CDX2Q99626 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC23.19■■□□□ 1.3
CDX2Q99626 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CDX2Q99626 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC23.18■■□□□ 1.3
CDX2Q99626 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC23.18■■□□□ 1.3
CDX2Q99626 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC23.18■■□□□ 1.3
CDX2Q99626 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC23.18■■□□□ 1.3
CDX2Q99626 UQCRFS1P1-201ENST00000435169 820 ntBASIC23.18■■□□□ 1.3
CDX2Q99626 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
CDX2Q99626 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC23.18■■□□□ 1.3
CDX2Q99626 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
CDX2Q99626 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC23.18■■□□□ 1.3
CDX2Q99626 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC23.18■■□□□ 1.3
CDX2Q99626 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
CDX2Q99626 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
CDX2Q99626 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC23.17■■□□□ 1.3
CDX2Q99626 SHF-207ENST00000560540 2062 ntTSL 5 BASIC23.17■■□□□ 1.3
CDX2Q99626 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
CDX2Q99626 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC23.17■■□□□ 1.3
CDX2Q99626 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC23.17■■□□□ 1.3
CDX2Q99626 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
CDX2Q99626 BET1L-207ENST00000529614 560 ntTSL 5 BASIC23.17■■□□□ 1.3
CDX2Q99626 INO80E-214ENST00000620599 515 ntTSL 2 BASIC23.17■■□□□ 1.3
CDX2Q99626 AL359736.2-201ENST00000621992 437 ntBASIC23.17■■□□□ 1.3
CDX2Q99626 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
CDX2Q99626 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CDX2Q99626 HLA-L-211ENST00000482052 1765 ntBASIC23.17■■□□□ 1.3
CDX2Q99626 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
CDX2Q99626 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC23.16■■□□□ 1.3
CDX2Q99626 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CDX2Q99626 SERP1-208ENST00000491660 830 ntTSL 2 BASIC23.16■■□□□ 1.3
CDX2Q99626 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC23.16■■□□□ 1.3
CDX2Q99626 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC23.16■■□□□ 1.3
CDX2Q99626 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CDX2Q99626 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
CDX2Q99626 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC23.15■■□□□ 1.3
CDX2Q99626 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
CDX2Q99626 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CDX2Q99626 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC23.15■■□□□ 1.3
CDX2Q99626 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CDX2Q99626 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC23.15■■□□□ 1.3
CDX2Q99626 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CDX2Q99626 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC23.15■■□□□ 1.3
CDX2Q99626 AL512625.2-201ENST00000417533 625 ntBASIC23.15■■□□□ 1.3
CDX2Q99626 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC23.15■■□□□ 1.3
CDX2Q99626 AC016405.3-201ENST00000607710 860 ntBASIC23.15■■□□□ 1.3
CDX2Q99626 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CDX2Q99626 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC23.15■■□□□ 1.3
CDX2Q99626 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
CDX2Q99626 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC23.14■■□□□ 1.3
CDX2Q99626 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC23.14■■□□□ 1.3
CDX2Q99626 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
CDX2Q99626 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
CDX2Q99626 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC23.14■■□□□ 1.3
CDX2Q99626 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC23.14■■□□□ 1.29
CDX2Q99626 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
CDX2Q99626 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC23.14■■□□□ 1.29
CDX2Q99626 TERF1P5-201ENST00000477545 1207 ntBASIC23.14■■□□□ 1.29
CDX2Q99626 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC23.14■■□□□ 1.29
CDX2Q99626 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
CDX2Q99626 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
CDX2Q99626 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC23.14■■□□□ 1.29
CDX2Q99626 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC23.14■■□□□ 1.29
CDX2Q99626 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC23.13■■□□□ 1.29
CDX2Q99626 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC23.13■■□□□ 1.29
CDX2Q99626 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
CDX2Q99626 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
CDX2Q99626 RPS20-210ENST00000523936 899 ntTSL 2 BASIC23.13■■□□□ 1.29
CDX2Q99626 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC23.13■■□□□ 1.29
CDX2Q99626 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC23.13■■□□□ 1.29
CDX2Q99626 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC23.13■■□□□ 1.29
CDX2Q99626 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC23.13■■□□□ 1.29
CDX2Q99626 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC23.13■■□□□ 1.29
CDX2Q99626 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC23.13■■□□□ 1.29
CDX2Q99626 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
CDX2Q99626 AC008694.1-202ENST00000636953 945 ntBASIC23.13■■□□□ 1.29
CDX2Q99626 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
CDX2Q99626 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
CDX2Q99626 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC23.12■■□□□ 1.29
CDX2Q99626 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC23.12■■□□□ 1.29
CDX2Q99626 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
CDX2Q99626 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
CDX2Q99626 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC23.12■■□□□ 1.29
CDX2Q99626 AC091874.3-201ENST00000512672 1195 ntBASIC23.12■■□□□ 1.29
CDX2Q99626 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
CDX2Q99626 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC23.12■■□□□ 1.29
CDX2Q99626 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC23.12■■□□□ 1.29
CDX2Q99626 OXCT2P1-201ENST00000447263 1535 ntBASIC23.12■■□□□ 1.29
CDX2Q99626 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC23.11■■□□□ 1.29
CDX2Q99626 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC23.11■■□□□ 1.29
CDX2Q99626 AC009237.3-201ENST00000393279 1427 ntBASIC23.11■■□□□ 1.29
CDX2Q99626 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
CDX2Q99626 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
CDX2Q99626 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC23.11■■□□□ 1.29
CDX2Q99626 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
CDX2Q99626 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
CDX2Q99626 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC23.11■■□□□ 1.29
CDX2Q99626 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC23.11■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms