Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC22.44■■□□□ 1.185e-10■■■□□ 17.4
DDX55Q8NHQ9 SLC50A1-202ENST00000368401 1166 ntTSL 1 (best) BASIC16.89■□□□□ 0.295e-10■■■□□ 17.4
DDX55Q8NHQ9 SLC50A1-203ENST00000368404 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.225e-10■■■□□ 17.4
DDX55Q8NHQ9 SLC50A1-214ENST00000622581 1245 ntTSL 5 BASIC15.33■□□□□ 0.045e-10■■■□□ 17.4
DDX55Q8NHQ9 SLC50A1-208ENST00000484027 596 ntTSL 314.51□□□□□ -0.095e-10■■■□□ 17.4
DDX55Q8NHQ9 SLC50A1-204ENST00000368405 1003 ntTSL 214.51□□□□□ -0.095e-10■■■□□ 17.4
DDX55Q8NHQ9 SLC50A1-207ENST00000479579 475 ntTSL 39.78□□□□□ -0.845e-10■■■□□ 17.4
DDX55Q8NHQ9 SMG9-201ENST00000270066 5510 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.124e-9■■■□□ 17.4
DDX55Q8NHQ9 EIF4A2-201ENST00000323963 1919 ntAPPRIS P2 TSL 1 (best) BASIC11.31□□□□□ -0.61e-33■■■□□ 17.3
DDX55Q8NHQ9 EIF4A2-207ENST00000443963 1729 ntTSL 1 (best)8.1□□□□□ -1.111e-33■■■□□ 17.3
DDX55Q8NHQ9 EIF4A2-203ENST00000426808 1751 ntTSL 1 (best)7.37□□□□□ -1.231e-33■■■□□ 17.3
DDX55Q8NHQ9 EIF4A2-205ENST00000440191 1889 ntAPPRIS ALT1 TSL 1 (best) BASIC7.12□□□□□ -1.271e-33■■■□□ 17.3
DDX55Q8NHQ9 EIF4A2-202ENST00000425053 1977 ntTSL 56.26□□□□□ -1.411e-33■■■□□ 17.3
DDX55Q8NHQ9 EIF4A2-219ENST00000485101 5327 ntTSL 54.54□□□□□ -1.681e-33■■■□□ 17.3
DDX55Q8NHQ9 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.724e-6■■■□□ 17.3
DDX55Q8NHQ9 IQGAP2-210ENST00000508410 758 ntTSL 515.02■□□□□ -04e-6■■■□□ 17.3
DDX55Q8NHQ9 IL6ST-206ENST00000381298 9057 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.533e-8■■■□□ 17.3
DDX55Q8NHQ9 IQGAP2-206ENST00000504477 2039 ntTSL 58.07□□□□□ -1.124e-6■■■□□ 17.3
DDX55Q8NHQ9 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC4.11□□□□□ -1.754e-6■■■□□ 17.3
DDX55Q8NHQ9 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC2.76□□□□□ -1.973e-8■■■□□ 17.3
DDX55Q8NHQ9 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.19□□□□□ -2.223e-8■■■□□ 17.3
DDX55Q8NHQ9 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.781e-6■■■□□ 17.3
DDX55Q8NHQ9 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC24.59■■□□□ 1.536e-7■■■□□ 17.3
DDX55Q8NHQ9 RHOC-216ENST00000484280 891 ntTSL 516.77■□□□□ 0.284e-7■■■□□ 17.3
DDX55Q8NHQ9 SMG7-212ENST00000507469 4642 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.446e-10■■■□□ 17.3
DDX55Q8NHQ9 SMG7-201ENST00000347615 5788 ntAPPRIS P3 TSL 1 (best) BASIC11.21□□□□□ -0.626e-10■■■□□ 17.3
DDX55Q8NHQ9 SMG7-215ENST00000515829 5629 ntAPPRIS ALT2 TSL 1 (best) BASIC10.81□□□□□ -0.686e-10■■■□□ 17.3
DDX55Q8NHQ9 SMG7-202ENST00000367537 5970 ntAPPRIS ALT2 TSL 5 BASIC9.17□□□□□ -0.946e-10■■■□□ 17.3
DDX55Q8NHQ9 SMG7-209ENST00000495321 556 ntTSL 38.41□□□□□ -1.066e-10■■■□□ 17.3
DDX55Q8NHQ9 NME4-204ENST00000433358 966 ntTSL 328.81■■■□□ 2.25e-9■■■□□ 17.3
DDX55Q8NHQ9 NME4-209ENST00000460297 1652 ntTSL 528.24■■■□□ 2.115e-9■■■□□ 17.3
DDX55Q8NHQ9 NME4-206ENST00000448828 1167 ntTSL 227.98■■■□□ 2.075e-9■■■□□ 17.3
DDX55Q8NHQ9 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.875e-9■■■□□ 17.3
DDX55Q8NHQ9 NME4-211ENST00000620944 1193 ntTSL 2 BASIC26.68■■□□□ 1.865e-9■■■□□ 17.3
DDX55Q8NHQ9 NME4-202ENST00000382940 766 ntTSL 3 BASIC26.68■■□□□ 1.863e-13■■■□□ 17.3
DDX55Q8NHQ9 NME4-205ENST00000444498 1111 ntTSL 322.96■■□□□ 1.275e-9■■■□□ 17.3
DDX55Q8NHQ9 NME4-212ENST00000621774 904 ntTSL 3 BASIC21.78■■□□□ 1.085e-9■■■□□ 17.3
DDX55Q8NHQ9 NME4-207ENST00000450036 985 ntTSL 3 BASIC18.7■□□□□ 0.585e-13■■■□□ 17.3
DDX55Q8NHQ9 NME4-203ENST00000397722 1232 ntTSL 2 BASIC16.74■□□□□ 0.275e-9■■■□□ 17.3
DDX55Q8NHQ9 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.321e-6■■■□□ 17.3
DDX55Q8NHQ9 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.111e-6■■■□□ 17.3
DDX55Q8NHQ9 MGRN1-203ENST00000415496 6405 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.051e-6■■■□□ 17.3
DDX55Q8NHQ9 SENP3-EIF4A1-201ENST00000614237 3519 ntAPPRIS P1 TSL 2 BASIC11.6□□□□□ -0.552e-9■■■□□ 17.3
DDX55Q8NHQ9 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.252e-6■■■□□ 17.3
DDX55Q8NHQ9 MRPL54-202ENST00000589174 491 ntTSL 313.93□□□□□ -0.182e-6■■■□□ 17.3
DDX55Q8NHQ9 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.861e-9■■■□□ 17.2
DDX55Q8NHQ9 FBL-210ENST00000599159 1400 ntTSL 1 (best)27.33■■□□□ 1.977e-12■■■□□ 17.2
DDX55Q8NHQ9 FBL-211ENST00000601274 877 ntTSL 526.93■■□□□ 1.97e-12■■■□□ 17.2
DDX55Q8NHQ9 FBL-203ENST00000594309 603 ntTSL 226.93■■□□□ 1.97e-12■■■□□ 17.2
DDX55Q8NHQ9 FBL-209ENST00000599134 500 ntTSL 525.75■■□□□ 1.717e-12■■■□□ 17.2
DDX55Q8NHQ9 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.497e-12■■■□□ 17.2
DDX55Q8NHQ9 FBL-208ENST00000598417 581 ntTSL 523.23■■□□□ 1.317e-12■■■□□ 17.2
DDX55Q8NHQ9 FBL-207ENST00000597634 726 ntTSL 518.84■□□□□ 0.617e-12■■■□□ 17.2
DDX55Q8NHQ9 FBL-204ENST00000594443 805 ntTSL 316.22■□□□□ 0.197e-12■■■□□ 17.2
DDX55Q8NHQ9 FBL-206ENST00000597224 732 ntTSL 310.23□□□□□ -0.777e-12■■■□□ 17.2
DDX55Q8NHQ9 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.292e-8■■■□□ 17.2
DDX55Q8NHQ9 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC21.77■■□□□ 1.082e-8■■■□□ 17.2
DDX55Q8NHQ9 PCED1A-206ENST00000487501 712 ntTSL 313.86□□□□□ -0.192e-8■■■□□ 17.2
DDX55Q8NHQ9 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC24.94■■□□□ 1.589e-10■■■□□ 17.2
DDX55Q8NHQ9 H2AFX-201ENST00000375167 1373 ntTSL 222.6■■□□□ 1.219e-10■■■□□ 17.2
DDX55Q8NHQ9 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC29.59■■■□□ 2.332e-6■■■□□ 17.2
DDX55Q8NHQ9 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC28.61■■■□□ 2.172e-6■■■□□ 17.2
DDX55Q8NHQ9 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.851e-6■■■□□ 17.2
DDX55Q8NHQ9 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.761e-6■■■□□ 17.2
DDX55Q8NHQ9 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.619e-8■■■□□ 17.2
DDX55Q8NHQ9 CSNK1G2-208ENST00000591002 617 ntTSL 323.72■■□□□ 1.391e-6■■■□□ 17.2
DDX55Q8NHQ9 POLE4-206ENST00000485527 405 ntTSL 223.58■■□□□ 1.371e-6■■■□□ 17.2
DDX55Q8NHQ9 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC23.57■■□□□ 1.361e-6■■■□□ 17.2
DDX55Q8NHQ9 POLE4-202ENST00000459636 760 ntTSL 323.48■■□□□ 1.351e-6■■■□□ 17.2
DDX55Q8NHQ9 TXNRD2-209ENST00000474308 1854 ntTSL 223.13■■□□□ 1.292e-6■■■□□ 17.2
DDX55Q8NHQ9 CIC-205ENST00000573349 927 ntTSL 223.07■■□□□ 1.281e-6■■■□□ 17.2
DDX55Q8NHQ9 CSNK1G2-205ENST00000589385 896 ntTSL 522.97■■□□□ 1.271e-6■■■□□ 17.2
DDX55Q8NHQ9 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC22.86■■□□□ 1.252e-6■■■□□ 17.2
DDX55Q8NHQ9 C19orf48-207ENST00000596655 1639 ntTSL 222.63■■□□□ 1.215e-8■■■□□ 17.2
DDX55Q8NHQ9 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC22.35■■□□□ 1.171e-6■■■□□ 17.2
DDX55Q8NHQ9 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.141e-6■■■□□ 17.2
DDX55Q8NHQ9 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.141e-6■■■□□ 17.2
DDX55Q8NHQ9 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC22.15■■□□□ 1.141e-6■■■□□ 17.2
DDX55Q8NHQ9 TXNRD2-220ENST00000634537 1086 ntTSL 521.87■■□□□ 1.092e-6■■■□□ 17.2
DDX55Q8NHQ9 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC21.56■■□□□ 1.042e-6■■■□□ 17.2
DDX55Q8NHQ9 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC20.94■□□□□ 0.941e-6■■■□□ 17.2
DDX55Q8NHQ9 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC20.89■□□□□ 0.931e-6■■■□□ 17.2
DDX55Q8NHQ9 TXNRD2-219ENST00000634471 748 ntTSL 320.82■□□□□ 0.922e-6■■■□□ 17.2
DDX55Q8NHQ9 TXNRD2-207ENST00000462843 810 ntTSL 320.82■□□□□ 0.922e-6■■■□□ 17.2
DDX55Q8NHQ9 RGS14-204ENST00000503044 458 ntTSL 220.78■□□□□ 0.921e-6■■■□□ 17.2
DDX55Q8NHQ9 RGS14-212ENST00000514102 875 ntTSL 220.71■□□□□ 0.911e-6■■■□□ 17.2
DDX55Q8NHQ9 PTDSS2-209ENST00000530029 579 ntTSL 220.68■□□□□ 0.91e-6■■■□□ 17.2
DDX55Q8NHQ9 RGS14-209ENST00000511890 1536 ntTSL 1 (best)20.34■□□□□ 0.851e-6■■■□□ 17.2
DDX55Q8NHQ9 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.851e-6■■■□□ 17.2
DDX55Q8NHQ9 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.852e-6■■■□□ 17.2
DDX55Q8NHQ9 RGS14-202ENST00000425155 2329 ntTSL 220.27■□□□□ 0.841e-6■■■□□ 17.2
DDX55Q8NHQ9 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC20.16■□□□□ 0.821e-6■■■□□ 17.2
DDX55Q8NHQ9 ERCC2-202ENST00000391942 1488 ntTSL 220.05■□□□□ 0.81e-6■■■□□ 17.2
DDX55Q8NHQ9 NBEAL2-209ENST00000476095 959 ntTSL 519.78■□□□□ 0.761e-6■■■□□ 17.2
DDX55Q8NHQ9 PDLIM5-212ENST00000509333 743 ntTSL 219.73■□□□□ 0.751e-6■■■□□ 17.2
DDX55Q8NHQ9 CIC-206ENST00000575287 846 ntTSL 319.53■□□□□ 0.721e-6■■■□□ 17.2
DDX55Q8NHQ9 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.675e-8■■■□□ 17.2
DDX55Q8NHQ9 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC19.2■□□□□ 0.662e-6■■■□□ 17.2
DDX55Q8NHQ9 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC19.1■□□□□ 0.655e-7■■■□□ 17.2
DDX55Q8NHQ9 CSNK1G2-203ENST00000585959 704 ntTSL 219.02■□□□□ 0.641e-6■■■□□ 17.2
Retrieved 100 of 15,504 protein–RNA pairs in 144.7 ms