Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
HMGN4O00479 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC20.28■□□□□ 0.84
HMGN4O00479 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
HMGN4O00479 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
HMGN4O00479 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
HMGN4O00479 STX4-202ENST00000394998 1498 ntTSL 2 BASIC20.27■□□□□ 0.84
HMGN4O00479 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
HMGN4O00479 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC20.27■□□□□ 0.84
HMGN4O00479 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
HMGN4O00479 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
HMGN4O00479 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
HMGN4O00479 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
HMGN4O00479 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
HMGN4O00479 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.83
HMGN4O00479 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC20.27■□□□□ 0.83
HMGN4O00479 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
HMGN4O00479 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC20.27■□□□□ 0.83
HMGN4O00479 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
HMGN4O00479 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HMGN4O00479 AC010542.4-201ENST00000563151 1910 ntBASIC20.26■□□□□ 0.83
HMGN4O00479 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HMGN4O00479 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC20.26■□□□□ 0.83
HMGN4O00479 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HMGN4O00479 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HMGN4O00479 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC20.26■□□□□ 0.83
HMGN4O00479 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HMGN4O00479 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
HMGN4O00479 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC20.26■□□□□ 0.83
HMGN4O00479 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC20.26■□□□□ 0.83
HMGN4O00479 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HMGN4O00479 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC20.26■□□□□ 0.83
HMGN4O00479 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
HMGN4O00479 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
HMGN4O00479 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
HMGN4O00479 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
HMGN4O00479 USP45-205ENST00000472914 1617 ntTSL 5 BASIC20.25■□□□□ 0.83
HMGN4O00479 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HMGN4O00479 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
HMGN4O00479 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC20.25■□□□□ 0.83
HMGN4O00479 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC20.25■□□□□ 0.83
HMGN4O00479 SRR-208ENST00000576848 588 ntTSL 4 BASIC20.25■□□□□ 0.83
HMGN4O00479 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC20.25■□□□□ 0.83
HMGN4O00479 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC20.25■□□□□ 0.83
HMGN4O00479 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC20.25■□□□□ 0.83
HMGN4O00479 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC20.25■□□□□ 0.83
HMGN4O00479 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HMGN4O00479 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HMGN4O00479 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC20.24■□□□□ 0.83
HMGN4O00479 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HMGN4O00479 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HMGN4O00479 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
HMGN4O00479 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HMGN4O00479 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
HMGN4O00479 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HMGN4O00479 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
HMGN4O00479 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
HMGN4O00479 AC092171.4-201ENST00000609130 632 ntBASIC20.24■□□□□ 0.83
HMGN4O00479 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HMGN4O00479 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HMGN4O00479 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HMGN4O00479 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HMGN4O00479 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
HMGN4O00479 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
HMGN4O00479 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
HMGN4O00479 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HMGN4O00479 EI24-211ENST00000534546 1544 ntTSL 2 BASIC20.23■□□□□ 0.83
HMGN4O00479 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC20.23■□□□□ 0.83
HMGN4O00479 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
HMGN4O00479 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HMGN4O00479 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
HMGN4O00479 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC20.23■□□□□ 0.83
HMGN4O00479 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
HMGN4O00479 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
HMGN4O00479 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC20.23■□□□□ 0.83
HMGN4O00479 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC20.23■□□□□ 0.83
HMGN4O00479 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC20.23■□□□□ 0.83
HMGN4O00479 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
HMGN4O00479 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC20.23■□□□□ 0.83
HMGN4O00479 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC20.23■□□□□ 0.83
HMGN4O00479 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
HMGN4O00479 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
HMGN4O00479 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HMGN4O00479 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC20.23■□□□□ 0.83
HMGN4O00479 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HMGN4O00479 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
HMGN4O00479 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
HMGN4O00479 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
HMGN4O00479 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC20.22■□□□□ 0.83
HMGN4O00479 RPP21-222ENST00000433076 577 ntTSL 2 BASIC20.22■□□□□ 0.83
HMGN4O00479 OR2I1P-207ENST00000453522 948 ntBASIC20.22■□□□□ 0.83
HMGN4O00479 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
HMGN4O00479 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
HMGN4O00479 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC20.22■□□□□ 0.83
HMGN4O00479 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
HMGN4O00479 FAM99A-202ENST00000538190 1989 ntBASIC20.22■□□□□ 0.83
HMGN4O00479 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC20.22■□□□□ 0.83
HMGN4O00479 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC20.22■□□□□ 0.83
HMGN4O00479 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
HMGN4O00479 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
HMGN4O00479 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms