Protein–RNA interactions for Protein: Q9NQT5

EXOSC3, Exosome complex component RRP40, humanhuman

Known RBP Predictions only

Length 275 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC3Q9NQT5 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC19.96■□□□□ 0.79
EXOSC3Q9NQT5 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
EXOSC3Q9NQT5 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC19.96■□□□□ 0.79
EXOSC3Q9NQT5 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC19.96■□□□□ 0.79
EXOSC3Q9NQT5 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC19.96■□□□□ 0.79
EXOSC3Q9NQT5 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC19.96■□□□□ 0.79
EXOSC3Q9NQT5 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC19.95■□□□□ 0.78
EXOSC3Q9NQT5 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
EXOSC3Q9NQT5 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
EXOSC3Q9NQT5 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
EXOSC3Q9NQT5 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
EXOSC3Q9NQT5 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
EXOSC3Q9NQT5 RBM38-205ENST00000440234 686 ntTSL 2 BASIC19.95■□□□□ 0.78
EXOSC3Q9NQT5 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
EXOSC3Q9NQT5 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC19.95■□□□□ 0.78
EXOSC3Q9NQT5 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC19.95■□□□□ 0.78
EXOSC3Q9NQT5 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC19.95■□□□□ 0.78
EXOSC3Q9NQT5 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
EXOSC3Q9NQT5 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
EXOSC3Q9NQT5 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
EXOSC3Q9NQT5 USP45-205ENST00000472914 1617 ntTSL 5 BASIC19.94■□□□□ 0.78
EXOSC3Q9NQT5 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC19.94■□□□□ 0.78
EXOSC3Q9NQT5 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
EXOSC3Q9NQT5 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
EXOSC3Q9NQT5 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
EXOSC3Q9NQT5 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
EXOSC3Q9NQT5 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
EXOSC3Q9NQT5 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC19.94■□□□□ 0.78
EXOSC3Q9NQT5 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
EXOSC3Q9NQT5 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC19.94■□□□□ 0.78
EXOSC3Q9NQT5 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC19.94■□□□□ 0.78
EXOSC3Q9NQT5 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
EXOSC3Q9NQT5 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC19.94■□□□□ 0.78
EXOSC3Q9NQT5 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC19.94■□□□□ 0.78
EXOSC3Q9NQT5 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
EXOSC3Q9NQT5 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
EXOSC3Q9NQT5 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
EXOSC3Q9NQT5 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
EXOSC3Q9NQT5 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
EXOSC3Q9NQT5 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
EXOSC3Q9NQT5 AC008406.3-201ENST00000620001 1374 ntBASIC19.94■□□□□ 0.78
EXOSC3Q9NQT5 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
EXOSC3Q9NQT5 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
EXOSC3Q9NQT5 EI24-211ENST00000534546 1544 ntTSL 2 BASIC19.93■□□□□ 0.78
EXOSC3Q9NQT5 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
EXOSC3Q9NQT5 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
EXOSC3Q9NQT5 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
EXOSC3Q9NQT5 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
EXOSC3Q9NQT5 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC19.93■□□□□ 0.78
EXOSC3Q9NQT5 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
EXOSC3Q9NQT5 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC19.93■□□□□ 0.78
EXOSC3Q9NQT5 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
EXOSC3Q9NQT5 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC19.92■□□□□ 0.78
EXOSC3Q9NQT5 AC092053.2-201ENST00000640557 1818 ntBASIC19.92■□□□□ 0.78
EXOSC3Q9NQT5 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
EXOSC3Q9NQT5 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
EXOSC3Q9NQT5 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
EXOSC3Q9NQT5 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
EXOSC3Q9NQT5 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
EXOSC3Q9NQT5 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
EXOSC3Q9NQT5 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
EXOSC3Q9NQT5 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
EXOSC3Q9NQT5 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
EXOSC3Q9NQT5 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
EXOSC3Q9NQT5 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
EXOSC3Q9NQT5 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
EXOSC3Q9NQT5 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC19.92■□□□□ 0.78
EXOSC3Q9NQT5 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
EXOSC3Q9NQT5 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC19.92■□□□□ 0.78
EXOSC3Q9NQT5 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC19.92■□□□□ 0.78
EXOSC3Q9NQT5 AC087239.1-201ENST00000622671 572 ntBASIC19.92■□□□□ 0.78
EXOSC3Q9NQT5 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC19.92■□□□□ 0.78
EXOSC3Q9NQT5 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC19.92■□□□□ 0.78
EXOSC3Q9NQT5 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
EXOSC3Q9NQT5 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
EXOSC3Q9NQT5 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
EXOSC3Q9NQT5 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
EXOSC3Q9NQT5 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
EXOSC3Q9NQT5 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
EXOSC3Q9NQT5 UNC93B3-201ENST00000308076 687 ntBASIC19.91■□□□□ 0.78
EXOSC3Q9NQT5 PTMA-205ENST00000410064 814 ntTSL 2 BASIC19.91■□□□□ 0.78
EXOSC3Q9NQT5 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
EXOSC3Q9NQT5 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
EXOSC3Q9NQT5 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
EXOSC3Q9NQT5 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
EXOSC3Q9NQT5 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
EXOSC3Q9NQT5 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
EXOSC3Q9NQT5 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC19.9■□□□□ 0.78
EXOSC3Q9NQT5 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC19.9■□□□□ 0.78
EXOSC3Q9NQT5 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC19.9■□□□□ 0.78
EXOSC3Q9NQT5 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC19.9■□□□□ 0.78
EXOSC3Q9NQT5 SNX3-202ENST00000349379 890 ntTSL 2 BASIC19.9■□□□□ 0.78
EXOSC3Q9NQT5 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
EXOSC3Q9NQT5 PEMT-206ENST00000435340 960 ntTSL 5 BASIC19.9■□□□□ 0.78
EXOSC3Q9NQT5 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
EXOSC3Q9NQT5 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC19.9■□□□□ 0.78
EXOSC3Q9NQT5 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC19.9■□□□□ 0.78
EXOSC3Q9NQT5 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC19.9■□□□□ 0.78
EXOSC3Q9NQT5 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC19.9■□□□□ 0.78
EXOSC3Q9NQT5 AC010525.1-201ENST00000585559 441 ntBASIC19.9■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms