Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
MSX2P35548 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
MSX2P35548 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
MSX2P35548 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
MSX2P35548 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC20.78■□□□□ 0.92
MSX2P35548 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
MSX2P35548 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
MSX2P35548 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
MSX2P35548 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
MSX2P35548 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
MSX2P35548 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC20.78■□□□□ 0.92
MSX2P35548 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC20.78■□□□□ 0.92
MSX2P35548 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.92
MSX2P35548 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
MSX2P35548 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
MSX2P35548 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
MSX2P35548 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
MSX2P35548 LINC01960-201ENST00000563759 1884 ntBASIC20.77■□□□□ 0.92
MSX2P35548 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
MSX2P35548 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC20.77■□□□□ 0.92
MSX2P35548 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
MSX2P35548 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
MSX2P35548 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
MSX2P35548 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
MSX2P35548 ABHD17AP3-201ENST00000503096 1137 ntBASIC20.77■□□□□ 0.92
MSX2P35548 U85056.1-201ENST00000616429 682 ntBASIC20.77■□□□□ 0.92
MSX2P35548 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC20.77■□□□□ 0.92
MSX2P35548 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
MSX2P35548 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
MSX2P35548 AC244015.2-201ENST00000616358 1861 ntBASIC20.77■□□□□ 0.92
MSX2P35548 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.91
MSX2P35548 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
MSX2P35548 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
MSX2P35548 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
MSX2P35548 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
MSX2P35548 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
MSX2P35548 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
MSX2P35548 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
MSX2P35548 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
MSX2P35548 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
MSX2P35548 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC20.76■□□□□ 0.91
MSX2P35548 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC20.76■□□□□ 0.91
MSX2P35548 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC20.76■□□□□ 0.91
MSX2P35548 AC022616.5-201ENST00000518796 181 ntBASIC20.76■□□□□ 0.91
MSX2P35548 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC20.76■□□□□ 0.91
MSX2P35548 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
MSX2P35548 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
MSX2P35548 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
MSX2P35548 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
MSX2P35548 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
MSX2P35548 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
MSX2P35548 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
MSX2P35548 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
MSX2P35548 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
MSX2P35548 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
MSX2P35548 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
MSX2P35548 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC20.75■□□□□ 0.91
MSX2P35548 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
MSX2P35548 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC20.75■□□□□ 0.91
MSX2P35548 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
MSX2P35548 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
MSX2P35548 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC20.74■□□□□ 0.91
MSX2P35548 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
MSX2P35548 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC20.74■□□□□ 0.91
MSX2P35548 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC20.74■□□□□ 0.91
MSX2P35548 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC20.74■□□□□ 0.91
MSX2P35548 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC20.74■□□□□ 0.91
MSX2P35548 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
MSX2P35548 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC20.74■□□□□ 0.91
MSX2P35548 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
MSX2P35548 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
MSX2P35548 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
MSX2P35548 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
MSX2P35548 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
MSX2P35548 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
MSX2P35548 HYI-210ENST00000486909 905 ntTSL 5 BASIC20.73■□□□□ 0.91
MSX2P35548 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC20.73■□□□□ 0.91
MSX2P35548 MIR4281-201ENST00000580852 62 ntBASIC20.73■□□□□ 0.91
MSX2P35548 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
MSX2P35548 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
MSX2P35548 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
MSX2P35548 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
MSX2P35548 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
MSX2P35548 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
MSX2P35548 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
MSX2P35548 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
MSX2P35548 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
MSX2P35548 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC20.72■□□□□ 0.91
MSX2P35548 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
MSX2P35548 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
MSX2P35548 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
MSX2P35548 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC20.72■□□□□ 0.91
MSX2P35548 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC20.72■□□□□ 0.91
MSX2P35548 MBP-237ENST00000579129 1052 ntTSL 5 BASIC20.72■□□□□ 0.91
MSX2P35548 AC019171.1-201ENST00000601251 1056 ntBASIC20.72■□□□□ 0.91
MSX2P35548 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
MSX2P35548 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC20.72■□□□□ 0.91
MSX2P35548 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
MSX2P35548 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
MSX2P35548 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms